View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18344_low_4 (Length: 249)

Name: NF18344_low_4
Description: NF18344
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18344_low_4
NF18344_low_4
[»] chr1 (1 HSPs)
chr1 (7-233)||(5131477-5131703)
[»] chr5 (8 HSPs)
chr5 (48-106)||(8547085-8547143)
chr5 (52-113)||(8678831-8678892)
chr5 (8-114)||(9004463-9004569)
chr5 (52-113)||(8645323-8645384)
chr5 (48-114)||(2873484-2873550)
chr5 (48-93)||(8530044-8530089)
chr5 (51-114)||(1599251-1599314)
chr5 (181-235)||(8637667-8637721)
[»] chr7 (2 HSPs)
chr7 (51-110)||(35780937-35780996)
chr7 (48-114)||(48360801-48360867)
[»] chr6 (1 HSPs)
chr6 (30-110)||(16717424-16717504)
[»] chr4 (1 HSPs)
chr4 (48-93)||(9444205-9444250)
[»] scaffold0627 (1 HSPs)
scaffold0627 (8-110)||(5711-5810)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 5131703 - 5131477
Alignment:
Q  7 gaagcaaaggggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc 106  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131703 gaagcaaaagggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc 5131604  T
Q  107 ccattaagctggagcctatatttaagcttcctcttcatgatgctaaatcgatcagggagaaaagagacgagattgagaataaatccaaacgccctcatcg 206  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||    
T  5131603 ccattaagctggagcctatatttaagcttcctcttcgtgatgctaaatcgatcagggagaaaagagacgagattgagaataaatccaaacaccctcttcg 5131504  T
Q  207 ggctgtgagattagctttggagaaaaa 233  Q
    |||||||||||||||||||||||||||    
T  5131503 ggctgtgagattagctttggagaaaaa 5131477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 48 - 106
Target Start/End: Original strand, 8547085 - 8547143
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttc 106  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  8547085 ttgcccttattttgataatcttccatctcacctcactgcccacattctgcttaaacttc 8547143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8678892 - 8678831
Alignment:
Q  52 ccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaa 113  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||| | |||||||||||    
T  8678892 ccttactttgataatcttccatcacacatcattgcccacattttgcttcatcttcccattaa 8678831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 9004569 - 9004463
Alignment:
Q  8 aagcaaaggggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcc 107  Q
    ||||||| ||||||| ||| | |||| ||||| ||| |  ||||||||| |||| |||||||||||| |||||||||  ||||||| ||||| | |||||    
T  9004569 aagcaaaagggaaagttgatgaggcagaaagtcatgaactttgcccttactttgctaatcttccatctcacctcactaaccacattctgcttcatcttcc 9004470  T
Q  108 cattaag 114  Q
    |||||||    
T  9004469 cattaag 9004463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 113
Target Start/End: Complemental strand, 8645384 - 8645323
Alignment:
Q  52 ccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaa 113  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| |||||| | |||||||||||    
T  8645384 ccttactttgataatcttccatcacacatcattgcccacatgttgcttcatcttcccattaa 8645323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 2873484 - 2873550
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 114  Q
    ||||||||| ||||||||||||||||| ||| | ||| |||||||| | ||| ||||||||||||||    
T  2873484 ttgcccttactttgataatcttccatctcacttaactacccacattcttcttcaacttcccattaag 2873550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 8530089 - 8530044
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacatt 93  Q
    |||||||||||||||||| ||||| || ||||||||||||||||||    
T  8530089 ttgcccttattttgataaacttccgtctcacctcactgcccacatt 8530044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Original strand, 1599251 - 1599314
Alignment:
Q  51 cccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 114  Q
    ||||| ||||||||||||| |||| ||| ||||||||| |||| ||||| ||||||| ||||||    
T  1599251 ccctttttttgataatctttcatctcacgtcactgcccgcattctgcttcaacttcctattaag 1599314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 8637721 - 8637667
Alignment:
Q  181 gagaataaatccaaacgccctcatcgggctgtgagattagctttggagaaaaatg 235  Q
    ||||||||| |||| ||||||  ||| |||| |||||||||||||||||||||||    
T  8637721 gagaataaacccaagcgccctattcgtgctgcgagattagctttggagaaaaatg 8637667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 35780996 - 35780937
Alignment:
Q  51 cccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccat 110  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  35780996 cccttattttgataatcttccatcccacctcaccgcccacattttgcttcaacttcccat 35780937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 48360801 - 48360867
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccattaag 114  Q
    ||||||||||||||||||||||||||  |||||||||||||||||| | ||| ||||||||||||||    
T  48360801 ttgcccttattttgataatcttccatatcacctcactgcccacattctccttcaacttcccattaag 48360867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 110
Target Start/End: Complemental strand, 16717504 - 16717424
Alignment:
Q  30 ggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcccat 110  Q
    |||| ||||| ||| |||| |||  |||||||||| ||||||||| |||||||| ||||||||||||||| ||||||||||    
T  16717504 ggcagaaagtgatgaatgtcgccactattttgatattcttccatcccacctcaccgcccacattttgcttcaacttcccat 16717424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 9444250 - 9444205
Alignment:
Q  48 ttgcccttattttgataatcttccatcacacctcactgcccacatt 93  Q
    |||||||||||||||||||||||| || ||||||||||||||||||    
T  9444250 ttgcccttattttgataatcttccgtctcacctcactgcccacatt 9444205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 5810 - 5711
Alignment:
Q  8 aagcaaaggggaaagatgaaggggcaaaaagtaatgcatgttgcccttattttgataatcttccatcacacctcactgcccacattttgcttaaacttcc 107  Q
    ||||||| ||||||| ||| | |||| ||||| ||| ||||||   ||||||||||| ||||||||| ||||||||  | |||||||| ||| |||||||    
T  5810 aagcaaaagggaaagttgaggaggcagaaagtcatgaatgttg---ttattttgatattcttccatcccacctcaccactcacatttttcttcaacttcc 5714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University