View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18345_high_2 (Length: 576)
Name: NF18345_high_2
Description: NF18345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18345_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 27909895 - 27909411
Alignment:
| Q |
1 |
tcaagttaagaagagtttgtggggctactagaaatataaagctagttaaagttttattcatttaattaggtttggtaatttctcacaagctctataaata |
100 |
Q |
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| T |
27909895 |
tcaagttaagaagagtttgtggggctattagaaatataaagctagttaaagttttgttcatttaattaggtttgttaatttctcacaagctctataaata |
27909796 |
T |
|
| Q |
101 |
aaatattttatatgcttatttacaatctttttaatcaaccattcaatatatgagaacaatatttatctctttgatcgttttgatttgtagcaatattgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27909795 |
aaatattttatatgcttatttacaatctttttaatcaaccattcaatatatgagaacaatatttatctctttgatcgttttgatttgtagcaatattgaa |
27909696 |
T |
|
| Q |
201 |
tcataactccaacaactaatcaacatataatataacacgtattcgagactttatatgaagttcaacattaacaaaccttcattcgaaatgccttgatttc |
300 |
Q |
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|||||| ||||||||||| ||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27909695 |
tcataattccaacaactattcaacat---atataacatgtatacgagactttatatgaagttcaacattaacaaaccttcattcgaagtgccttgatttc |
27909599 |
T |
|
| Q |
301 |
attaagaatcttcttttcctgaatgtaaaagatt--nnnnnnnnntattatccatgctatatataaaaaagttagaagtggttttggagtggtactttca |
398 |
Q |
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| T |
27909598 |
attaagaatcttcttttcctgaatgtaaaagattaaaaaaaaaaaaattatccatgctatatataaaaaagttagaagtggttttggagtggtactttca |
27909499 |
T |
|
| Q |
399 |
ctttcagttataccttaaacaaatttgtttataagaatattatacatttgatgtcattgtaaaagataattatgatttgttacaattt |
486 |
Q |
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| T |
27909498 |
gtttcagttataccttaaacaaatttgtttataagaatattatacatttgatgttattgtaaaagataattatgatttgttacaattt |
27909411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 28040212 - 28040260
Alignment:
| Q |
394 |
tttcactttcagttataccttaaacaaatttgtttataagaatattata |
442 |
Q |
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||||||||||| ||||||||||||||||||| | |||||||| ||||| |
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| T |
28040212 |
tttcactttcaattataccttaaacaaattttctcataagaatgttata |
28040260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 486
Target Start/End: Complemental strand, 43990502 - 43990462
Alignment:
| Q |
446 |
ttgatgtcattgtaaaagataattatgatttgttacaattt |
486 |
Q |
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|||||||||||| ||||||||| |||||||||||| ||||| |
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| T |
43990502 |
ttgatgtcattgaaaaagataaatatgatttgttataattt |
43990462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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