View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18345_high_5 (Length: 253)
Name: NF18345_high_5
Description: NF18345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18345_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 37529202 - 37528971
Alignment:
| Q |
1 |
caggcacagaactggtgtgtgatacagaaacgtggtacgaaggattttaagaggagtgtagtgtagtgaggtgggtcagtgggccttcaaagttaaggat |
100 |
Q |
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| T |
37529202 |
caggcacagaactggtgtgtgatacagaaacgtggtacgaaggattttaagaggagtgtagtgtagtgaggtgggtcagtgggccttcaaagttaaggat |
37529103 |
T |
|
| Q |
101 |
ttacacaacagaaattttccccccgtgtatcccgcgggatactgcactcctatatatctaatcctaatctaatctatataacttttatttatgcnnnnnn |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37529102 |
ttacacaacagaaaatttccccccgtgtatcccgcgggatactgcactcctatatatctaatcctaatctaatctatataacttttatttatgcaaaaaa |
37529003 |
T |
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| Q |
201 |
nttaattctaatctaaaatactatagtatagt |
232 |
Q |
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|||| |||||||||||||||||||||||||| |
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| T |
37529002 |
attaaatctaatctaaaatactatagtatagt |
37528971 |
T |
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