View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18345_low_1 (Length: 688)
Name: NF18345_low_1
Description: NF18345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18345_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 9 - 480
Target Start/End: Original strand, 18109944 - 18110415
Alignment:
| Q |
9 |
agcaaaggttgaaaaagctcaagagaccaatattccatcaccacaatctactaatttggaagaatcaaccaaagacatgaaaagtgattcacctcaaact |
108 |
Q |
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| T |
18109944 |
agcaaaggttgaaaaagctcaagagaccaatattccaccaccacaatctactaatttggaagaatcaactaaagacatgaaaagtgattcacctcaaact |
18110043 |
T |
|
| Q |
109 |
tctcaaagcattgnnnnnnngacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaag |
208 |
Q |
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| T |
18110044 |
tctcaaagcattgaaaaaaagacacaaaatgatgatgacacatcatctcaaattcctcaaaagggtcaacaagaatttgagccaaaaccaacatctaaag |
18110143 |
T |
|
| Q |
209 |
acacaaccaatgaccaaatagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatga |
308 |
Q |
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| T |
18110144 |
acacaaccaatgaccaaatagatgaaaagtctcaaaagggtcaagaagaatttgaaacaagaccaacatcaatagagagagccaaaacacaaatagatga |
18110243 |
T |
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| Q |
309 |
aaagcctcaaaatggtcaacaagtgttggagtcaaaaccaacatctatagagagaaccaaaacacaaacaaatgaaaaggctcaaaagggtgaagaggaa |
408 |
Q |
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| T |
18110244 |
aaagcctcaaaatggtcaacaagtgttggagtcaaaaccaacatctatagagagaaccaaagcacaaacaaatgaaaaggctcaaaagggtgaagaggaa |
18110343 |
T |
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| Q |
409 |
gtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
480 |
Q |
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| T |
18110344 |
gtagaaccaaaaacaatagagaaattggttaccaaagaaaatttagaggaaaagatagtaggaatgagtgct |
18110415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 542 - 672
Target Start/End: Original strand, 18110477 - 18110607
Alignment:
| Q |
542 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
641 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18110477 |
cttatgagtcaagcaagaatcaaaacttagaagaaaaggaagttgaaaaagcagaaccttctgctccaaatgttccagagaaggaaaaggaatcttgctg |
18110576 |
T |
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| Q |
642 |
cagaattcctccaaatcaagaaggaaagaat |
672 |
Q |
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| T |
18110577 |
cagaattcctcccaatcaagaaggaaagaat |
18110607 |
T |
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