View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18345_low_3 (Length: 420)

Name: NF18345_low_3
Description: NF18345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18345_low_3
NF18345_low_3
[»] chr3 (2 HSPs)
chr3 (1-420)||(47846219-47846635)
chr3 (345-397)||(14778734-14778786)
[»] chr1 (3 HSPs)
chr1 (301-410)||(4686109-4686218)
chr1 (367-409)||(38720066-38720108)
chr1 (96-148)||(4686401-4686453)
[»] chr4 (1 HSPs)
chr4 (341-409)||(40253987-40254055)
[»] chr2 (1 HSPs)
chr2 (348-410)||(40819427-40819489)
[»] chr7 (2 HSPs)
chr7 (367-403)||(13297808-13297844)
chr7 (362-398)||(33928495-33928531)
[»] chr5 (1 HSPs)
chr5 (345-409)||(5113879-5113943)


Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 47846219 - 47846635
Alignment:
Q  1 cagaaatataatttgcttgttgttcttcatgaacttgttgtcttgaaagaacaccaccatcatgtaatggataataatcatcatcttcattagagaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846219 cagaaatataatttgcttgttgttcttcatgaacttgttgtcttgaaagaacaccaccatcatgtaatggataataatcatcatcttcattagagaatct 47846318  T
Q  101 cccaccaagcttgattagaaattttctaatagaatcttgatcgttgaaactagaatcttggtttgtgtaggtcaacgatggatgaacattttgtggccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  47846319 cccaccaagcttgattagaaattttctaatagaatcttgatcgttgaaactagaaccttggtttgtgtaggtcaacgatggatgaatattttgtggccaa 47846418  T
Q  201 caatatggttgtaaaatatgttgatcagaaattaaattagatgaagaattctgatcactccttcttccattgctctcatgattagcactagctaataatt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||    
T  47846419 caatatggttgtaaaatatgttgatcagaaattaaattagatgaagaattc---tcactccttcttccattgctctcatgattagcactagctaataatt 47846515  T
Q  301 tattacgtgcttgtaattgttgttctttacgatgcttccctaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc 400  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47846516 tattacgtgcttgtaattgttgttctttacgatgcttcccaaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc 47846615  T
Q  401 cggcaattgacccgcaatca 420  Q
     |||||||||||||||||||    
T  47846616 gggcaattgacccgcaatca 47846635  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 397
Target Start/End: Original strand, 14778734 - 14778786
Alignment:
Q  345 agcttctttttcagttttgtgttccaatagttctttatatcattatcggttct 397  Q
    |||||||||||||| ||||||||||||| |||||| | |||||| || |||||    
T  14778734 agcttctttttcagctttgtgttccaattgttcttaacatcattgtctgttct 14778786  T

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Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 301 - 410
Target Start/End: Complemental strand, 4686218 - 4686109
Alignment:
Q  301 tattacgtgcttgtaattgttgttctttacgatgcttccctaaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcc 400  Q
    ||||||||||||||  |||||| |||||||| || ||||| ||||||||||||||||   |||| ||||||||||||||||| |||||||| ||||||||    
T  4686218 tattacgtgcttgttgttgttgatctttacggtgtttccccaaaagcttctttttcaaccttgtattccaatagttctttatgtcattatcagttcttcc 4686119  T
Q  401 cggcaattga 410  Q
     |||||||||    
T  4686118 tggcaattga 4686109  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 367 - 409
Target Start/End: Complemental strand, 38720108 - 38720066
Alignment:
Q  367 tccaatagttctttatatcattatcggttcttcccggcaattg 409  Q
    |||||||||||||||| ||||| |||||||||||||| |||||    
T  38720108 tccaatagttctttatttcattgtcggttcttcccggtaattg 38720066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 4686453 - 4686401
Alignment:
Q  96 aatctcccaccaagcttgattagaaattttctaatagaatcttgatcgttgaa 148  Q
    ||||| || |||||||| || |||| ||||||||||||||||||||| |||||    
T  4686453 aatcttcctccaagcttcataagaagttttctaatagaatcttgatcattgaa 4686401  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 409
Target Start/End: Original strand, 40253987 - 40254055
Alignment:
Q  341 taaaagcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattg 409  Q
    |||||| ||||| ||||  |||||||||||||||||||||||||||||||| |||| ||| || |||||    
T  40253987 taaaagtttcttcttcaactttgtgttccaatagttctttatatcattatccgttcgtcctggtaattg 40254055  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 348 - 410
Target Start/End: Original strand, 40819427 - 40819489
Alignment:
Q  348 ttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattga 410  Q
    ||||| || |||||||||||||| ||||| || ||||||||||| |||||||| || ||||||    
T  40819427 ttcttctttagttttgtgttccagtagtttttgatatcattatcagttcttcctggtaattga 40819489  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 403
Target Start/End: Complemental strand, 13297844 - 13297808
Alignment:
Q  367 tccaatagttctttatatcattatcggttcttcccgg 403  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  13297844 tccagtagttctttatctcattatcggttcttcccgg 13297808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 362 - 398
Target Start/End: Original strand, 33928495 - 33928531
Alignment:
Q  362 tgtgttccaatagttctttatatcattatcggttctt 398  Q
    |||||||||||| ||||||||||||||||| ||||||    
T  33928495 tgtgttccaataattctttatatcattatctgttctt 33928531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 409
Target Start/End: Complemental strand, 5113943 - 5113879
Alignment:
Q  345 agcttctttttcagttttgtgttccaatagttctttatatcattatcggttcttcccggcaattg 409  Q
    |||||||| |||||  | |||||||| |||||||||||||||||||| |||| ||| || |||||    
T  5113943 agcttcttcttcagcctagtgttccagtagttctttatatcattatccgttcgtcctggtaattg 5113879  T

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