View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18345_low_4 (Length: 277)

Name: NF18345_low_4
Description: NF18345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18345_low_4
NF18345_low_4
[»] chr2 (1 HSPs)
chr2 (72-197)||(36277746-36277871)
[»] chr8 (3 HSPs)
chr8 (141-192)||(28979021-28979072)
chr8 (139-193)||(14011086-14011140)
chr8 (139-185)||(18123853-18123899)
[»] chr4 (3 HSPs)
chr4 (133-192)||(36045817-36045876)
chr4 (157-191)||(9302693-9302727)
chr4 (140-192)||(30615991-30616044)
[»] chr5 (6 HSPs)
chr5 (141-194)||(35813289-35813342)
chr5 (140-192)||(13862119-13862171)
chr5 (140-191)||(42553190-42553241)
chr5 (140-186)||(28537129-28537175)
chr5 (140-185)||(3535992-3536037)
chr5 (146-186)||(41405143-41405183)
[»] chr6 (7 HSPs)
chr6 (140-188)||(9443516-9443564)
chr6 (140-191)||(8175990-8176041)
chr6 (140-193)||(10455736-10455789)
chr6 (135-192)||(30833006-30833063)
chr6 (140-193)||(34524869-34524922)
chr6 (141-193)||(12341416-12341468)
chr6 (141-193)||(31639136-31639188)
[»] chr1 (6 HSPs)
chr1 (138-186)||(24119298-24119346)
chr1 (140-195)||(7906372-7906427)
chr1 (143-196)||(7015732-7015785)
chr1 (140-193)||(18003810-18003863)
chr1 (140-193)||(52961130-52961183)
chr1 (140-192)||(9768858-9768910)
[»] scaffold0168 (1 HSPs)
scaffold0168 (140-193)||(34081-34134)
[»] chr3 (2 HSPs)
chr3 (140-193)||(16874238-16874291)
chr3 (144-192)||(3461773-3461821)


Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 72 - 197
Target Start/End: Complemental strand, 36277871 - 36277746
Alignment:
Q  72 ctttcaataactcatattttaacggaacaaatgtctataatagacaactttaaaaaattacaaattacgtccccgtgagcatagttcaattgacactgac 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||    
T  36277871 ctttcaataactcatattttaacggaacaaatgtctataatagacaactttaaaaaattacaaattacgtccccgtgagcatagctcagttggcagtgac 36277772  T
Q  172 atgcattgttatatgtaggggctgaa 197  Q
    ||||||||||||||||||||| ||||    
T  36277771 atgcattgttatatgtaggggttgaa 36277746  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 192
Target Start/End: Original strand, 28979021 - 28979072
Alignment:
Q  141 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 192  Q
    ||||||||||||||||||| |||| |  ||||||||||||||||||||||||    
T  28979021 tccccgtgagcatagttcagttgatagggacatgcattgttatatgtagggg 28979072  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 193
Target Start/End: Complemental strand, 14011140 - 14011086
Alignment:
Q  139 cgtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||| |||||||||||||| ||| ||  |||||||||||||||||| ||||||    
T  14011140 cgtccctgtgagcatagttcagttggcagggacatgcattgttatatgcaggggc 14011086  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 18123853 - 18123899
Alignment:
Q  139 cgtccccgtgagcatagttcaattgacactgacatgcattgttatat 185  Q
    ||||||||||||||||||||||||||||  || || |||||||||||    
T  18123853 cgtccccgtgagcatagttcaattgacagggatatacattgttatat 18123899  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 36045817 - 36045876
Alignment:
Q  133 aaattacgtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 192  Q
    |||||| ||||| |||||||||| ||||||||||  |||||||||||||||||| |||||    
T  36045817 aaattatgtcccagtgagcatagctcaattgacagggacatgcattgttatatgcagggg 36045876  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 191
Target Start/End: Complemental strand, 9302727 - 9302693
Alignment:
Q  157 tcaattgacactgacatgcattgttatatgtaggg 191  Q
    ||||||||||| |||||||||||||||||||||||    
T  9302727 tcaattgacacggacatgcattgttatatgtaggg 9302693  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 30615991 - 30616044
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgac-atgcattgttatatgtagggg 192  Q
    |||||||||||||||| ||||||||||  ||| ||||||||||||||| |||||    
T  30615991 gtccccgtgagcatagctcaattgacatggacaatgcattgttatatgcagggg 30616044  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 35813342 - 35813289
Alignment:
Q  141 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggct 194  Q
    ||||||||||||||| ||| ||||||  |||||||||||||||||| |||||||    
T  35813342 tccccgtgagcatagctcagttgacagggacatgcattgttatatgcaggggct 35813289  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 13862119 - 13862171
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 192  Q
    |||||||||||||||||||| ||||||  || ||||||||||||||| |||||    
T  13862119 gtccccgtgagcatagttcagttgacatggatatgcattgttatatgcagggg 13862171  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 42553241 - 42553190
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggg 191  Q
    |||||||||||||||| ||| ||||||  |||||||||||||||||| ||||    
T  42553241 gtccccgtgagcatagctcagttgacaacgacatgcattgttatatgcaggg 42553190  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Original strand, 28537129 - 28537175
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatg 186  Q
    |||||||||||||||  ||||||||||  ||||||||||||||||||    
T  28537129 gtccccgtgagcataactcaattgacatggacatgcattgttatatg 28537175  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 3536037 - 3535992
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatat 185  Q
    |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  3536037 gtccccgtgagcatagttcagttggcagggacatgcattgttatat 3535992  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 41405183 - 41405143
Alignment:
Q  146 gtgagcatagttcaattgacactgacatgcattgttatatg 186  Q
    |||||||||||||| ||||||  ||||||||||||||||||    
T  41405183 gtgagcatagttcagttgacagggacatgcattgttatatg 41405143  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 9443564 - 9443516
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgta 188  Q
    |||||||||||||||| ||| |||| || ||||||||||||||||||||    
T  9443564 gtccccgtgagcatagctcagttgatacggacatgcattgttatatgta 9443516  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 8175990 - 8176041
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggg 191  Q
    |||||||||||||||| ||| ||||||  |||||||||||||||||| ||||    
T  8175990 gtccccgtgagcatagctcagttgacagagacatgcattgttatatgcaggg 8176041  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 10455736 - 10455789
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||||||||||||||||| ||| ||   ||||||||||||||||| ||||||    
T  10455736 gtccccgtgagcatagttcagttggcaggaacatgcattgttatatgcaggggc 10455789  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 30833006 - 30833063
Alignment:
Q  135 attacgtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 192  Q
    |||| |||||| ||||||||||||| ||| ||  |||||||||||||||||| |||||    
T  30833006 attaagtccccatgagcatagttcagttggcagggacatgcattgttatatgcagggg 30833063  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 34524869 - 34524922
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  34524869 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 34524922  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 12341416 - 12341468
Alignment:
Q  141 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    ||||||||||||||||||| ||||||   |||| |||| ||||||||||||||    
T  12341416 tccccgtgagcatagttcagttgacaggaacatacattattatatgtaggggc 12341468  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Original strand, 31639136 - 31639188
Alignment:
Q  141 tccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    ||||||||||||||  ||| ||||||  |||| ||||||||||||||||||||    
T  31639136 tccccgtgagcataactcagttgacagggacacgcattgttatatgtaggggc 31639188  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 24119298 - 24119346
Alignment:
Q  138 acgtccccgtgagcatagttcaattgacactgacatgcattgttatatg 186  Q
    |||||||||||| ||||||||| ||||||  ||||||||||||||||||    
T  24119298 acgtccccgtgaacatagttcagttgacaaggacatgcattgttatatg 24119346  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 195
Target Start/End: Complemental strand, 7906427 - 7906372
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggctg 195  Q
    |||||||||||||||||||| |||  |  |||||||||||||||||| ||||||||    
T  7906427 gtccccgtgagcatagttcagttggtagggacatgcattgttatatgcaggggctg 7906372  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 7015785 - 7015732
Alignment:
Q  143 cccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggctga 196  Q
    ||||||||||||| ||| ||| |   ||||||||||||||||||||||||||||    
T  7015785 cccgtgagcatagctcagttggctgggacatgcattgttatatgtaggggctga 7015732  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 18003810 - 18003863
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  18003810 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 18003863  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 52961183 - 52961130
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  52961183 gtccccgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggc 52961130  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 9768910 - 9768858
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 192  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| |||||    
T  9768910 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcagggg 9768858  T

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Target: scaffold0168 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 34134 - 34081
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  34134 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 34081  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 16874291 - 16874238
Alignment:
Q  140 gtccccgtgagcatagttcaattgacactgacatgcattgttatatgtaggggc 193  Q
    |||||||||||||||| ||| ||| ||  |||||||||||||||||| ||||||    
T  16874291 gtccccgtgagcatagctcagttggcagggacatgcattgttatatgcaggggc 16874238  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 3461821 - 3461773
Alignment:
Q  144 ccgtgagcatagttcaattgacactgacatgcattgttatatgtagggg 192  Q
    |||||||||||  ||| ||||||  ||||||||||||||||||||||||    
T  3461821 ccgtgagcataactcagttgacagggacatgcattgttatatgtagggg 3461773  T

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