View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18345_low_6 (Length: 250)
Name: NF18345_low_6
Description: NF18345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18345_low_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 22572855 - 22573093
Alignment:
| Q |
12 |
aagaatattacgagaattcaaagaattgggacgatttgaagccatgattttcttcaaaaagcttcaaattggttgttaatggggttagggttttcaattt |
111 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22572855 |
aagaatattacgagacttcaaagaattgggacgatttgaagccatgattttcttcaaaaagcttcaaattggttgttaatggggttagggttttcaattt |
22572954 |
T |
|
| Q |
112 |
ggggaagaatgggtgaagattgaagatgaatgatgacgaatctgatggggcagtattgaaacacgctggatttttatgccacatgctttgcgttaatcct |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22572955 |
ggggaagaatgggtgaagattgaagattaatgatgacgaatctgatggggcagtattgaaacacgctggatttttatgccacatgctttgcgttaatcct |
22573054 |
T |
|
| Q |
212 |
taagaccttaaaccttttcaagtcaaaatatcaagtgtt |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22573055 |
taagaccttaaatcttttcaagtcaaaatatcaagtgtt |
22573093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 32 - 182
Target Start/End: Complemental strand, 24676931 - 24676782
Alignment:
| Q |
32 |
aagaattgggacgatttgaagccatgattttcttcaaaaagcttcaaattggttgttaatggggttagggttttcaatttggggaagaatgggtgaagat |
131 |
Q |
| |
|
||||||| || ||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
24676931 |
aagaatttgggcgatttgaagccatgcttttcttcaaaaagcttcaaattgattgttaatgaggttagggttttcaatttggggacgaatgggtgaa-at |
24676833 |
T |
|
| Q |
132 |
tgaagatgaatgatgacgaatctgatggggcagtattgaaacacgctggat |
182 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
24676832 |
tgaagaggaatgatgaggaatatgatggggcagtattgaaacacgctggat |
24676782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 13489075 - 13489205
Alignment:
| Q |
45 |
atttgaagccatgattttcttcaaaaagcttcaaattggttgttaatggggttagggttttcaatttggggaagaatgggtgaagattgaagatgaatga |
144 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
13489075 |
atttgaagccatgcttttcttaaaaaagcttcaaattggttgttaatgaggttagggttttcaatttggggaagaatgggtgaagattgaagaagagtga |
13489174 |
T |
|
| Q |
145 |
tgacgaatctgatggggcagtattgaaacac |
175 |
Q |
| |
|
||| |||| |||||||| ||||||| ||||| |
|
|
| T |
13489175 |
tgaggaatgtgatggggtagtattggaacac |
13489205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 182
Target Start/End: Original strand, 32702186 - 32702342
Alignment:
| Q |
26 |
aattcaaagaattgggacgatttgaagccatgattttcttcaaaaagcttcaaattggttgttaatggggttagggttttcaatttggggaagaatgggt |
125 |
Q |
| |
|
|||| |||||||| || ||||||||||||| | |||||||||||||| || |||||||||||||||| |||||||| ||||||||||||| |||||||| |
|
|
| T |
32702186 |
aatttaaagaatttgggcgatttgaagccaagcttttcttcaaaaagtttgaaattggttgttaatgaggttagggccttcaatttggggacgaatgggt |
32702285 |
T |
|
| Q |
126 |
gaagattgaagatgaatgatgacgaatctgatggggcagtattgaaacacgctggat |
182 |
Q |
| |
|
||| |||||||| ||||||||| |||| |||||||||||||||| |||||| ||||| |
|
|
| T |
32702286 |
gaaaattgaagaggaatgatgaagaatatgatggggcagtattggaacacgttggat |
32702342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University