View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18346_high_10 (Length: 273)

Name: NF18346_high_10
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18346_high_10
NF18346_high_10
[»] chr3 (7 HSPs)
chr3 (35-273)||(26215163-26215401)
chr3 (91-273)||(35870278-35870459)
chr3 (100-273)||(48266209-48266380)
chr3 (156-273)||(52349726-52349842)
chr3 (35-77)||(346615-346657)
chr3 (35-79)||(5885643-5885687)
chr3 (35-79)||(10176721-10176765)
[»] chr4 (13 HSPs)
chr4 (39-273)||(5430592-5430829)
chr4 (35-273)||(34737825-34738061)
chr4 (39-273)||(53830531-53830767)
chr4 (35-269)||(21802776-21803008)
chr4 (35-268)||(21632800-21633032)
chr4 (104-273)||(2500670-2500838)
chr4 (156-273)||(2505027-2505143)
chr4 (169-273)||(46092315-46092419)
chr4 (169-273)||(46134840-46134944)
chr4 (35-126)||(26382347-26382438)
chr4 (124-273)||(20036251-20036399)
chr4 (40-78)||(27256664-27256702)
chr4 (35-79)||(43942135-43942179)
[»] chr8 (8 HSPs)
chr8 (36-273)||(20171837-20172074)
chr8 (35-228)||(11428188-11428381)
chr8 (36-273)||(8150517-8150752)
chr8 (35-273)||(10186234-10186470)
chr8 (35-269)||(4138197-4138436)
chr8 (35-98)||(32663986-32664048)
chr8 (237-273)||(918981-919017)
chr8 (35-98)||(9083128-9083190)
[»] chr7 (6 HSPs)
chr7 (36-273)||(44393547-44393784)
chr7 (39-273)||(47233848-47234079)
chr7 (156-273)||(25419601-25419717)
chr7 (156-273)||(39066896-39067012)
chr7 (156-273)||(5768090-5768206)
chr7 (39-79)||(47140378-47140418)
[»] scaffold0516 (1 HSPs)
scaffold0516 (36-273)||(3127-3363)
[»] chr5 (5 HSPs)
chr5 (35-273)||(37302014-37302250)
chr5 (39-273)||(21605093-21605324)
chr5 (156-273)||(36991043-36991159)
chr5 (35-126)||(11386778-11386869)
chr5 (35-79)||(10180446-10180490)
[»] chr2 (9 HSPs)
chr2 (35-273)||(41646734-41646968)
chr2 (156-273)||(7574117-7574233)
chr2 (156-273)||(16668712-16668828)
chr2 (237-273)||(43564239-43564275)
chr2 (35-98)||(6414332-6414394)
chr2 (36-78)||(29455086-29455128)
chr2 (237-273)||(29455449-29455485)
chr2 (39-79)||(29752926-29752966)
chr2 (35-79)||(37904093-37904137)
[»] chr1 (7 HSPs)
chr1 (44-257)||(23726066-23726278)
chr1 (91-273)||(22912554-22912735)
chr1 (156-273)||(13786229-13786345)
chr1 (156-273)||(25807798-25807914)
chr1 (35-78)||(39621653-39621696)
chr1 (91-129)||(23727848-23727886)
chr1 (35-75)||(29679056-29679096)
[»] chr6 (2 HSPs)
chr6 (156-273)||(13433479-13433595)
chr6 (39-79)||(16855932-16855972)
[»] scaffold0061 (1 HSPs)
scaffold0061 (35-78)||(46384-46427)
[»] scaffold0017 (1 HSPs)
scaffold0017 (35-78)||(152360-152403)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 26215163 - 26215401
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215163 catgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 26215262  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26215263 tgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatg 26215362  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  26215363 tgttataatccattttattaatagcgaggggttacattt 26215401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 35870278 - 35870459
Alignment:
Q  91 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaa 190  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||| | ||||||||||||||| |||  |    
T  35870278 taactaatctctcatacttatgccatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcga 35870376  T
Q  191 aaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||| |||| ||||||||||    
T  35870377 aaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagaggttacattt 35870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 48266209 - 48266380
Alignment:
Q  100 tctcatacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctcc 199  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||| |||| ||||||||||||||| || ||||||||||||||| ||| |||||||||||    
T  48266209 tctcatacttatgtcatgtggctatcttttcttcttgattctttactagtcattccttactatct-atctttcattttccatcagttgcaaaaactctcc 48266307  T
Q  200 atttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||| |||||||| ||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||    
T  48266308 atttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattt 48266380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 52349726 - 52349842
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  52349726 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 52349824  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  52349825 tattgaggggttacattt 52349842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 346615 - 346657
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaa 77  Q
    |||||||||||||||||||||| |||||||||||  |||||||    
T  346615 catgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 5885687 - 5885643
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| ||||  ||||||||||||||||    
T  5885687 catgtattctaacctacattttgcttacatgtcacttcaccaatg 5885643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 10176765 - 10176721
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||||||||||| | |||||||||| | |||||||    
T  10176765 catgtattctaaactacatttttcctatgtgtcaccttaccaatg 10176721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 39 - 273
Target Start/End: Original strand, 5430592 - 5430829
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5430592 tattataaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgccatgtggctctcttttgttcttgat 5430691  T
Q  139 tctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgtt 238  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  5430692 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtatt 5430791  T
Q  239 ataatccattttat---taatagtgaggggttacattt 273  Q
    ||||||||||||||   |||||||||||||||||||||    
T  5430792 ataatccattttattaataatagtgaggggttacattt 5430829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 34738061 - 34737825
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| | |||||||||| | |||||||  | |||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  34738061 catgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttatgccatgtggatctcttttgttct 34737963  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| ||||||||||| ||| ||||| | ||||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||| |||||    
T  34737962 tgattctttactagccattccgtacaatcta-tctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacacaatgaatg 34737864  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
      ||||||||||||||||||| | |||||||||||||||    
T  34737863 cattataatccattttattaacaatgaggggttacattt 34737825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 53830767 - 53830531
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||||||| ||||||||| | |||||||||| | ||| |||    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  53830767 tattctaagctacatttttcctatgtgtcaccttaccgatgcccccctttt-taactaatctctcatacttatgccatgtggctatcttttgttcttgat 53830669  T
Q  139 tctttgctagccattccttactatcta---atttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    ||||| |||||| ||||||||||||||   || ||||||||||||||  ||| |||||| ||| ||||||||||||||||| ||||||||||| |||||     
T  53830668 tctttactagccgttccttactatctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacacaatgaatgc 53830569  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||| |||||||||||||||    
T  53830568 attataatccattttattaatattgaggggttacattt 53830531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 21802776 - 21803008
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||  | |||||||||| | |||||||    |||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  21802776 catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccaagtggctctcttttgttct 21802874  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| |||||||||| ||||||||| || |||||||| | |||| ||| ||||||  | ||||||||||||||| || ||||||||||| |||||    
T  21802875 tgattctttactagccattcattactatct-atctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatg 21802973  T
Q  235 tgttataatccattttattaatagtgaggggttac 269  Q
      ||||||||||||||||||||| |||||||||||    
T  21802974 cattataatccattttattaatattgaggggttac 21803008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 268
Target Start/End: Complemental strand, 21633032 - 21632800
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| | |||||||||| | ||||||     |||||  ||||||||||||||||||||||||| ||||| ||||||||||||    
T  21633032 catgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttc-taactaatctctcatacttatgccaagtggcgctcttttgttct 21632934  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattg-gaaaaactctccatttacttcacttcatggaagttacacaacgaat 233  Q
    ||||||||| |||||||||||||||||||| || |||||||||| |||| |||  ||||||  | ||||||||||||||| || ||||||||| | ||||    
T  21632933 tgattctttactagccattccttactatct-atctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatgaat 21632835  T
Q  234 gtgttataatccattttattaatagtgaggggtta 268  Q
    |  |||| |||||||||||||||| ||||||||||    
T  21632834 gcattatgatccattttattaatattgaggggtta 21632800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 273
Target Start/End: Complemental strand, 2500838 - 2500670
Alignment:
Q  104 atacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccattt 203  Q
    |||||||||||||||||||||||||||||||||||||  | |||  ||||||||||||| || | |||||||| |||||  ||| |||||  | ||||||    
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactattta-tctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  204 acttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||| ||||| ||||| |||||  ||||||||||||||||||||| || | ||||||||||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattt 2500670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 2505143 - 2505027
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  2505143 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 2505045  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  2505044 tattgaggggttacattt 2505027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 46092315 - 46092419
Alignment:
Q  169 tttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggtta 268  Q
    ||||||||||||||  ||  |||||||  ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  46092315 tttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggtta 46092414  T
Q  269 cattt 273  Q
    |||||    
T  46092415 cattt 46092419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 46134840 - 46134944
Alignment:
Q  169 tttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggtta 268  Q
    ||||||||||||||  ||  |||||||  ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  46134840 tttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggtta 46134939  T
Q  269 cattt 273  Q
    |||||    
T  46134940 cattt 46134944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 26382347 - 26382438
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctct 126  Q
    |||||||||||| ||||||||| ||||  |||||| ||||||| | | ||| |||||||| |||||||||||||||||||||||||||||||    
T  26382347 catgtattctaagctacattttccttacatgtcacctcaccaaagctctccctttgtaaccaatctctcatacttatgccatgtggctctct 26382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 273
Target Start/End: Original strand, 20036251 - 20036399
Alignment:
Q  124 tcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaa-ctctccatttacttcacttcatggaagtt 222  Q
    |||||||||||| ||||||| |||| ||||| |||||||||| | |||||||| ||||||  || ||||| | || || ||||||||||||||| |||||    
T  20036251 tcttttgttctt-attctttactagtcattcattactatcta-tctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagtt 20036348  T
Q  223 acacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
     || || |||||  ||||||| ||||||||||||| ||||  |||||||||    
T  20036349 gcataatgaatgcattataattcattttattaatattgagcagttacattt 20036399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 27256664 - 27256702
Alignment:
Q  40 attctaaactacattttacttatgtgtcacttcaccaat 78  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  27256664 attctaaactacactttacttatgtgtcacctcaccaat 27256702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 43942135 - 43942179
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| ||||  ||||||||||||||||    
T  43942135 catgtattctaatctacattttgcttacatgtcacttcaccaatg 43942179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 20171837 - 20172074
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||| | | ||||||||| ||||||||||||||||||||||    
T  20171837 atgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttctt 20171936  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  20171937 gattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgt 20172036  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||||||||||||| |||||    
T  20172037 attataatccattttattaatagtgaggggtttcattt 20172074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 11428381 - 11428188
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| |||||||||||| |||| ||| ||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  11428381 catgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctctcttttgttct 11428282  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaa 228  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11428281 tgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaa 11428188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 36 - 273
Target Start/End: Complemental strand, 8150752 - 8150517
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||||||| ||||||||| | |||||||||| | |||||||    |||||  ||||||||||||||||||||||||||||| ||| |||||||||||    
T  8150752 atgtattctaagctacattttgcatatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccatgtgactcacttttgttctt 8150654  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| ||||||||| |||||||||| || |||||||| |||||| ||| |||||| ||||||||||||||||| |||  |||||||||| |||||     
T  8150653 gattctttactagccatttcttactatct-atctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgc 8150555  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     |||||||| |||||||||||| |||||||||||||||    
T  8150554 attataatcaattttattaatattgaggggttacattt 8150517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 10186234 - 10186470
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||  | |||||||||| | |||||||    |||||  |||||||| |||| ||||||||||| ||| ||||||||||||||    
T  10186234 catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatatctcttacttatgccaagtgactctcttttgttct 10186332  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| |||| ||||||||||||||| || |||||||| | |||| ||| ||||||  | ||||||| ||||||| || ||||||||||| |||||    
T  10186333 tgattctttactagtcattccttactatct-atctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatgaatg 10186431  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
      ||||||||||||||||||||| |||||||||||||||    
T  10186432 cattataatccattttattaatattgaggggttacattt 10186470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 4138197 - 4138436
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||  | |||||||||| | |||||||    |||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  4138197 catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccaagtggctctcttttgttct 4138295  T
Q  135 tgattctttgctagccattccttactatcta------atttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaa 228  Q
    ||||||||| ||||||||||  |||||||||      || |||||||| | |||  ||| ||||||  | ||||||||||||||| || |||||||||||    
T  4138296 tgattctttactagccattctctactatctatctttcatctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaagttacacaa 4138395  T
Q  229 cgaatgtgttataatccattttattaatagtgaggggttac 269  Q
     |||||  |||||||| |||||||||||| |||||||||||    
T  4138396 tgaatgcattataatctattttattaatattgaggggttac 4138436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 32663986 - 32664048
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaat 98  Q
    |||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||| ||||||||    
T  32663986 catgtattctaaactacactttgcttatgtgtcacctcaccaat-ttttccctttctaactaat 32664048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 919017 - 918981
Alignment:
Q  237 ttataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||||| |||||||||||||||    
T  919017 ttataatccattttattaatattgaggggttacattt 918981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 9083190 - 9083128
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaat 98  Q
    |||||||||||||||||| ||| |||||||||||| |||| ||| |||| ||||| ||||||||    
T  9083190 catgtattctaaactacactttgcttatgtgtcacctcactaatttttttctttt-taactaat 9083128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 44393547 - 44393784
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||| | | ||||||||| ||||||||||||||||||||||    
T  44393547 atgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttctt 44393646  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  44393647 gattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgt 44393746  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||||||||||||| |||||    
T  44393747 attataatccattttattaatagtgaggggtttcattt 44393784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 47234079 - 47233848
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||||||||||| ||||| | |||||||||||| |||||||    || ||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  47234079 tattctaaactatatttttcctatgtgtcactttaccaatgcc--ccctttctaactaatctctcatacttatgtcatgtggctatcttttgttcttgat 47233982  T
Q  139 tctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgtt 238  Q
    ||||| |||| |||||||||||||||| | ||||||||||||||| ||| |||||| || |||||||||||||||||| ||||||||||| |||||  ||    
T  47233981 tctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcatt 47233883  T
Q  239 ataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||| | |||||||||||||    
T  47233882 ataatccattttattaatattaaggggttacattt 47233848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 25419717 - 25419601
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  25419717 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25419619  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  25419618 tattgaggggttacattt 25419601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 39067012 - 39066896
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  39067012 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 39066914  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  39066913 tattgaggggttacattt 39066896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 5768206 - 5768090
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||| ||||||||||    
T  5768206 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaa 5768108  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  5768107 tattgaggggttacattt 5768090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 47140378 - 47140418
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  47140378 tattctaaactacactttgcttatgtgtcacctcaccaatg 47140418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 3127 - 3363
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| |||||||||| ||||||| | || |||||||| |||||| ||| |||||| || |||||||||||||||||| ||||| ||||| || ||     
T  3227 gattctttactagccattctttactat-ttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattga 3325  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||| | || ||||||||||    
T  3326 attataatccattttattaatattaagcggttacattt 3363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 37302250 - 37302014
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| | |||||||||| | |||||||  |||||||  |||||||||||| ||||||||||||||||| |||||||||||||    
T  37302250 catgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttc-taactaatctcttatacttatgccatgtggatctcttttgttct 37302152  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| ||||||||||| ||| ||||| | |||||||| |||||| ||| |||||| ||||||||||||||||||||| ||||||||||| |||||    
T  37302151 tgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatg 37302053  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
      ||||||||||||||||||||| ||  |||||||||||    
T  37302052 cattataatccattttattaataatggagggttacattt 37302014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 21605324 - 21605093
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||||||| ||||||||| | |||||||||| | ||||||     || ||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  21605324 tattctaagctacatttttcctatgtgtcaccttaccaatacc--ccctttctaactaatctctcatacttatgtcatgtggctatcttttgttcttgat 21605227  T
Q  139 tctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgtt 238  Q
    |||||  ||| ||||||||||||||| || |||||||||||||    || |||||| || |||||||||||||||||| ||||||||||| |||||  ||    
T  21605226 tctttattagtcattccttactatct-atctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcatt 21605128  T
Q  239 ataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||| |||||||||| ||||    
T  21605127 ataatccattttattaatattgaggggttaaattt 21605093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 36991043 - 36991159
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||| ||||||||||    
T  36991043 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaa 36991141  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  36991142 tattgaggggttacattt 36991159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 11386778 - 11386869
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctct 126  Q
    |||||||||||| ||||||||| ||||  |||||| |||||||   | ||| |||||||| |||||||||||||||||||||||||||||||    
T  11386778 catgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 10180446 - 10180490
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||    
T  10180446 catgtattctaacctacattttgcttatgtgtcacctcaccaatg 10180490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 41646968 - 41646734
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||| ||| ||||||||| | |||||||||| | ||||||||   || ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  41646968 catgtattataagctacatttttcctatgtgtcaccttaccaatgtcccccctttttaactaatctctcatacttatgccatgtggctatcttttgttct 41646869  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| ||||||||||||||||     || ||||||||||||||  ||| |||||| |||||||||||||| |||||| ||||||||||| |||||    
T  41646868 tgattctttactagccattccttactt----atctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaatg 41646773  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
    | || |||||||||||||||||| |||||||||||||||    
T  41646772 tattttaatccattttattaatattgaggggttacattt 41646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 7574233 - 7574117
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  7574233 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 7574135  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  7574134 tattgaggggttacattt 7574117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 16668828 - 16668712
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||| || |||||  |||||||||||||||||||    
T  16668828 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaa 16668730  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  16668729 tattgaggggttacattt 16668712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 43564239 - 43564275
Alignment:
Q  237 ttataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||||| |||||||||||||||    
T  43564239 ttataatccattttattaatattgaggggttacattt 43564275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 6414394 - 6414332
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaat 98  Q
    |||||||||||||||||| ||| |||||||||||| |||| ||| |||| ||||| ||||||||    
T  6414394 catgtattctaaactacactttgcttatgtgtcacctcactaatttttttctttt-taactaat 6414332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 29455086 - 29455128
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    ||||||||||| ||||||||| | |||||||||||||||||||    
T  29455086 atgtattctaagctacatttttcctatgtgtcacttcaccaat 29455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 29455449 - 29455485
Alignment:
Q  237 ttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||||||||||||||||  ||||||||||||||    
T  29455449 ttataatccattttattaatatcgaggggttacattt 29455485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 29752926 - 29752966
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  29752926 tattctaaactacactttgcttatgtgtcacctcaccaatg 29752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 37904137 - 37904093
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| | |||||||||| |||||||||    
T  37904137 catgtattctaagctacatttttcctatgtgtcacctcaccaatg 37904093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 23726278 - 23726066
Alignment:
Q  44 taaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgattcttt 143  Q
    |||| ||||||||  ||||||||||||||||||  || | |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  23726278 taaattacattttgtttatgtgtcacttcaccagcgtctcccttttgtaactaatctctcatacttatgttatatggctctcttttgttcttgattcttt 23726179  T
Q  144 gctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataat 243  Q
     || | ||||| ||||||||| || ||||||||| ||||  ||| |||||| || ||||||||||| |||||| ||||| ||||| |||||  |||||||    
T  23726178 actggtcattctttactatct-atctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataat 23726080  T
Q  244 ccattttattaata 257  Q
    ||||||||||||||    
T  23726079 ccattttattaata 23726066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 273
Target Start/End: Complemental strand, 22912735 - 22912554
Alignment:
Q  91 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatca-attgga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||| ||||||  ||| |    
T  22912735 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattat-ttatctttcatttcccatcaggttgca 22912637  T
Q  190 aaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
     |||| |||||||||||||||||| || | |||||| || |||||  |||||| |||||||||||||| ||||| |||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattt 22912554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 13786229 - 13786345
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  13786229 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13786327  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  13786328 tattgaggggttacattt 13786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 25807914 - 25807798
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  25807914 ttactatcta-tctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25807816  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  25807815 tattgaggggttacattt 25807798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 39621653 - 39621696
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||    
T  39621653 catgtattctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 23727886 - 23727848
Alignment:
Q  91 taactaatctctcatacttatgccatgtggctctctttt 129  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23727886 taaccaatctctcatacttatgccaagtggctctctttt 23727848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 29679056 - 29679096
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcacc 75  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  29679056 catgtattctaaactacactttgcttatgtgtcacctcacc 29679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 13433595 - 13433479
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  13433595 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13433497  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  13433496 tattgaggggttacattt 13433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 16855932 - 16855972
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  16855932 tattctaaactacattttgcttacatgtcacttcaccaatg 16855972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 46427 - 46384
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||    
T  46427 catgtattctaagctacactttacttatgtgtcacctcaccaat 46384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 152360 - 152403
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||    
T  152360 catgtattctaagctacactttacttatgtgtcacctcaccaat 152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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