View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18346_high_13 (Length: 260)
Name: NF18346_high_13
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_high_13 |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: scaffold0190 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5534 - 5277
Alignment:
| Q |
1 |
ccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattagatagaacaaatcaaatccaacacctta |
100 |
Q |
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| T |
5534 |
ccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattagatagaacaaatcaaatccaacacctta |
5435 |
T |
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| Q |
101 |
aagactctctttcttctacccttgatattttttggcccttcacaggtcgtctcaagatcagaacagaacacgaagctaatacaatttcgtgttccatcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |
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| T |
5434 |
aagactctctttcttctacccttgatattttttggcccttcacaggtcgtctcaagataacaacagaacacgaagctaatacaatttcgtgttccatcgt |
5335 |
T |
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| Q |
201 |
gtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatctgtgctgct |
258 |
Q |
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| T |
5334 |
gtgcaacaacgaaggtgcactctttgttcacgccgtagcgaaaaacatcagtgttgct |
5277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 15743994 - 15744220
Alignment:
| Q |
1 |
ccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcctttcgaattagatagaacaaatcaaatccaacacctta |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||| ||||||| | | ||||| | | ||||||||||| ||||||||| |
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| T |
15743994 |
ccatgggatctacaattcctcccatttggagtcaaccaaaagggccttatttatcatcatccttccaacttagacacatcaaatcaaatcgaacacctta |
15744093 |
T |
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| Q |
101 |
aagactctctttcttctacccttgatattttttggcccttcacaggtcgtctcaagatcagaacagaacacgaagctaatacaatttcgtgttccatcgt |
200 |
Q |
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|| |||||||||| || |||||||| ||||| ||||| || ||||||||||| ||| | |||||||||| ||| || || |||||||||||| |
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| T |
15744094 |
aacactctctttcatccacccttgaattttttccaccctttactggtcgtctcaaaatc---aaggaacacgaagataacactatctcgtgttccatcac |
15744190 |
T |
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| Q |
201 |
gtgcaacaacgaaggtgcactctttgttca |
230 |
Q |
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| T |
15744191 |
gtgcaacaatgttggtgcactatttgttca |
15744220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 15190207 - 15190268
Alignment:
| Q |
1 |
ccatgggatctacaattcctcccatttggattcaaccaaaaggggcttctttatcaacatcc |
62 |
Q |
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| T |
15190207 |
ccatgggatcttcaattcctcccatttggatccaaccaaaaggggtttctttatcaccatcc |
15190268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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