View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18346_high_14 (Length: 249)

Name: NF18346_high_14
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18346_high_14
NF18346_high_14
[»] chr5 (6 HSPs)
chr5 (61-242)||(32225415-32225593)
chr5 (143-203)||(23924456-23924516)
chr5 (143-208)||(31293470-31293535)
chr5 (141-203)||(26756145-26756207)
chr5 (141-204)||(26527228-26527291)
chr5 (141-207)||(6218676-6218742)
[»] chr7 (5 HSPs)
chr7 (85-242)||(25480905-25481059)
chr7 (85-184)||(9600356-9600452)
chr7 (85-184)||(9827927-9828023)
chr7 (141-207)||(36781634-36781700)
chr7 (113-190)||(44799867-44799944)
[»] chr4 (4 HSPs)
chr4 (141-208)||(19145561-19145628)
chr4 (144-208)||(10358931-10358995)
chr4 (109-208)||(41332914-41333013)
chr4 (113-205)||(5475286-5475378)
[»] chr6 (4 HSPs)
chr6 (85-206)||(3024921-3025039)
chr6 (140-207)||(26585841-26585908)
chr6 (113-203)||(22757237-22757327)
chr6 (141-205)||(15473089-15473153)
[»] chr3 (4 HSPs)
chr3 (90-208)||(30187364-30187478)
chr3 (142-204)||(9167012-9167074)
chr3 (150-208)||(14092600-14092658)
chr3 (140-205)||(54264874-54264938)
[»] chr2 (5 HSPs)
chr2 (140-205)||(28920301-28920366)
chr2 (144-204)||(11973507-11973567)
chr2 (144-204)||(42052776-42052836)
chr2 (141-199)||(35431393-35431451)
chr2 (147-208)||(33035098-33035159)
[»] chr1 (4 HSPs)
chr1 (141-204)||(43912950-43913013)
chr1 (141-204)||(51410928-51410991)
chr1 (141-207)||(3854156-3854222)
chr1 (140-192)||(32590678-32590730)
[»] chr8 (5 HSPs)
chr8 (141-203)||(9740320-9740382)
chr8 (140-206)||(23636710-23636776)
chr8 (141-208)||(28211143-28211210)
chr8 (140-199)||(30702412-30702471)
chr8 (141-207)||(6744410-6744476)


Alignment Details
Target: chr5 (Bit Score: 144; Significance: 8e-76; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 32225593 - 32225415
Alignment:
Q  61 tttccaacacaacaaacaatttgtagaacgttaagtttctgtcttttattgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactg 160  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||   | |||||||||||||||||||||| ||||||| |||||||||||||||||    
T  32225593 tttccaacacaacaaacaatttggagaacgttaagtttctgtctttt---gcttggttgaaagctaaaatgttcccattcgccttcagttatactgactg 32225497  T
Q  161 gtggtggaaccccttattatgtatgggtgttacggagtagttttcttccattttatttcttcttttggattgccctttgctt 242  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32225496 gtggtggaaccccttattatgtatgagtgttacggagtagttttcttccattttatttcttcttttggattgccttttgctt 32225415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 23924516 - 23924456
Alignment:
Q  143 tttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttt 203  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||| ||| ||||||||||    
T  23924516 tttcagttataatgactggtggaggaaccctttattatgtatgggtcttagggagtagttt 23924456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 208
Target Start/End: Complemental strand, 31293535 - 31293470
Alignment:
Q  143 tttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||||||||| |||||| ||| || |||| ||||||||||||||||||| || ||||||||||||    
T  31293535 tttcagttataatgactgatggcggcaccctttattatgtatgggtgttagggggtagttttcttc 31293470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 26756145 - 26756207
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttt 203  Q
    ||||| ||||| | |||||||||| ||||||| ||||||||||||||| ||| ||||||||||    
T  26756145 gcttttagttacaatgactggtggcggaaccctttattatgtatgggtattaaggagtagttt 26756207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 26527291 - 26527228
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagtttt 204  Q
    ||||||||||| |  ||||||||||||||||  |||||||||||| || ||| |||||||||||    
T  26527291 gctttcagttacaacgactggtggtggaaccttttattatgtatgtgtattagggagtagtttt 26527228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 6218676 - 6218742
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttctt 207  Q
    ||||||||||||| ||||||||||||  |||| ||| | ||||| ||||||| |||||||| |||||    
T  6218676 gctttcagttataatgactggtggtgacacccgttaatttgtataggtgttagggagtagtcttctt 6218742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 242
Target Start/End: Original strand, 25480905 - 25481059
Alignment:
Q  85 agaacgttaagtttctgtcttttattgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtat 184  Q
    |||||||||||| | ||||||||   | ||||| |||||| ||||||||| || ||||||||||||||| |||||||||| || |||| |||||||||||    
T  25480905 agaacgttaagtatttgtctttt---gcttggtagaaagcaaaaatgttcccaatcgctttcagttatattgactggtggcgggaccctttattatgtat 25481001  T
Q  185 gggtgttacggagtagttttcttccattttatttcttcttttggattgccctttgctt 242  Q
    |||||||| |||  || ||||||||||||||||||||||||||||||||| |||||||    
T  25481002 gggtgttagggaacagctttcttccattttatttcttcttttggattgccttttgctt 25481059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 9600452 - 9600356
Alignment:
Q  85 agaacgttaagtttctgtcttttattgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtat 184  Q
    |||||||||||||| ||||||||   | ||||||||||||||||||| || | | |||||||||||||||||| |||||| || ||||  ||||||||||    
T  9600452 agaacgttaagtttttgtctttt---gcttggttgaaagctaaaatgctcacttccgctttcagttatactgattggtggcggcaccctctattatgtat 9600356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 184
Target Start/End: Complemental strand, 9828023 - 9827927
Alignment:
Q  85 agaacgttaagtttctgtcttttattgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtat 184  Q
    |||||||||||||| ||||||||   | ||||||||||||||||||| || | | |||||||||||||||||| |||||| || ||||  ||||||||||    
T  9828023 agaacgttaagtttttgtctttt---gcttggttgaaagctaaaatgctcacttccgctttcagttatactgattggtggcggcaccctctattatgtat 9827927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 36781634 - 36781700
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttctt 207  Q
    |||||||||||||  ||| ||||| ||||||||||||||||||||||||||| || |||||| ||||    
T  36781634 gctttcagttataacgaccggtggcggaaccccttattatgtatgggtgttagggtgtagttctctt 36781700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Complemental strand, 44799944 - 44799867
Alignment:
Q  113 ttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtatgggtgt 190  Q
    ||||||||||| ||||||| ||   |||||||||||||||||| |||||||| || | || |||||||||||||||||    
T  44799944 ttggttgaaagttaaaatgctcattttcgctttcagttatactcactggtggcggcatcctttattatgtatgggtgt 44799867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 19145561 - 19145628
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||||||||||| |||||||||| || |||| ||||||||||||||||||  |||||||||||||||    
T  19145561 gctttcagttataatgactggtggcggcaccctttattatgtatgggtgttggggagtagttttcttc 19145628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 10358931 - 10358995
Alignment:
Q  144 ttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||||||||||||||||||| || |||| || |||||||| ||||||| ||| ||| |||||||    
T  10358931 ttcagttatactgactggtggcggcaccctttgttatgtataggtgttagggactagctttcttc 10358995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 41332914 - 41333013
Alignment:
Q  109 ttgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||||||||||||||||||||||   | ||||| | || |||||||||||||||| || |||| |||  ||| |||| ||||||  ||||| |||||||    
T  41332914 ttgtttggttgaaagctaaaatgtatactttcgcctacacttatactgactggtggcggcaccctttaccatggatggatgttacatagtagctttcttc 41333013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 5475378 - 5475286
Alignment:
Q  113 ttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttc 205  Q
    |||||| |||||||| ||| || | | ||||||| |||| | || | ||||| ||||||| ||| ||||| ||||||||| ||||||||||||    
T  5475378 ttggttaaaagctaagatgctcacttccgctttcggttacaatggcgggtggcggaaccctttagtatgtttgggtgttagggagtagttttc 5475286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 85 - 206
Target Start/End: Complemental strand, 3025039 - 3024921
Alignment:
Q  85 agaacgttaagtttctgtcttttattgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtat 184  Q
    |||||||||||||| ||||||||  |   ||| |||||||||||||| || | | ||||||||||||||||||| ||||| || |||| ||||||||| |    
T  3025039 agaacgttaagtttttgtctttttct---tggatgaaagctaaaatgctcacttacgctttcagttatactgaccggtggcggcaccctttattatgtgt 3024943  T
Q  185 gggtgttacggagtagttttct 206  Q
    || ||| | ||||||| |||||    
T  3024942 ggatgtcatggagtagctttct 3024921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 26585908 - 26585841
Alignment:
Q  140 cgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttctt 207  Q
    ||||||| |||| | |||||||||| ||| ||| ||||||||||||||| ||| |||||||| |||||    
T  26585908 cgctttcggttacaatgactggtggcggagccctttattatgtatgggtattagggagtagtcttctt 26585841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 203
Target Start/End: Complemental strand, 22757327 - 22757237
Alignment:
Q  113 ttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttt 203  Q
    |||||| |||||||| |||||| | | | ||||| |||| | |||| ||||| ||| ||| |||| |||||||||||||| ||||||||||    
T  22757327 ttggttaaaagctaagatgttcacttccactttcggttacaatgacgggtggcggagccctttatcatgtatgggtgttagggagtagttt 22757237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 15473089 - 15473153
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttc 205  Q
    ||||||||||||| |||||||| | || |||| ||| ||||||||||||||| ||| ||| ||||    
T  15473089 gctttcagttataatgactggttgcggcaccctttactatgtatgggtgttatggaatagctttc 15473153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 30187478 - 30187364
Alignment:
Q  90 gttaagtttctgtcttttattgtttggttgaaagctaaaatgttctcattcgctttcagttatactgactggtggtggaaccccttattatgtatgggtg 189  Q
    ||||||||| ||||||||    |||||||||||||||||||| || |   ||| || ||||| |||||||||||| || |||| || |||||||||||||    
T  30187478 gttaagtttttgtctttt----tttggttgaaagctaaaatgctcactgccgcctttagttacactgactggtggcggcaccctttgttatgtatgggtg 30187383  T
Q  190 ttacggagtagttttcttc 208  Q
    ||| ||| ||| |||||||    
T  30187382 ttagggactagctttcttc 30187364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 9167012 - 9167074
Alignment:
Q  142 ctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagtttt 204  Q
    ||||||||||   |||||||||| || |||| ||||||||||||||||||| |||||||||||    
T  9167012 ctttcagttactatgactggtggcggcaccctttattatgtatgggtgttaaggagtagtttt 9167074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 14092600 - 14092658
Alignment:
Q  150 tatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||||||||||||| ||||||| || |||||||||||||||| ||| ||| |||||||    
T  14092600 tatactgactggtggcggaaccctttgttatgtatgggtgttagggactagctttcttc 14092658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 54264874 - 54264938
Alignment:
Q  140 cgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttc 205  Q
    |||||||| ||||| |||| ||||| || |||| ||||| ||||||||||||| ||||||||||||    
T  54264874 cgctttcaattataatgacgggtggcggcaccc-ttattttgtatgggtgttatggagtagttttc 54264938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 28920366 - 28920301
Alignment:
Q  140 cgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttc 205  Q
    |||||||||||||| |||||||||| || |||| ||| | ||||||||||||| ||||||||||||    
T  28920366 cgctttcagttataatgactggtggcggcaccctttactttgtatgggtgttatggagtagttttc 28920301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 11973507 - 11973567
Alignment:
Q  144 ttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagtttt 204  Q
    |||||||| | |||||||||| ||||||| ||||||||||||||| ||| |||||||||||    
T  11973507 ttcagttacaatgactggtggcggaaccctttattatgtatgggtattagggagtagtttt 11973567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 42052776 - 42052836
Alignment:
Q  144 ttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagtttt 204  Q
    |||||||| | |||||||||| ||||||| ||||||||||||| | ||| |||||||||||    
T  42052776 ttcagttacaatgactggtggcggaaccctttattatgtatggatattagggagtagtttt 42052836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 35431393 - 35431451
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagta 199  Q
    ||||||||||||| |||||||||| || |||| ||| | ||||||||||||| ||||||    
T  35431393 gctttcagttataatgactggtggcggcaccctttaatttgtatgggtgttatggagta 35431451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 33035159 - 33035098
Alignment:
Q  147 agttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||| ||||| |||||| || |||| ||||||||||||||||||| ||| ||| |||||||    
T  33035159 agttacactgattggtggcggcaccctttattatgtatgggtgttagggactagctttcttc 33035098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 43913013 - 43912950
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagtttt 204  Q
    |||||||||||||||||||||||| || |||| |||   ||||||||||||| |||||||||||    
T  43913013 gctttcagttatactgactggtggcggcaccctttaacttgtatgggtgttatggagtagtttt 43912950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 51410928 - 51410991
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagtttt 204  Q
    ||||||||||||| |||||||||| ||||||| |||   ||||||||||||| |||||||||||    
T  51410928 gctttcagttataatgactggtggcggaaccctttaacttgtatgggtgttatggagtagtttt 51410991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Complemental strand, 3854222 - 3854156
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttctt 207  Q
    ||||||||||||| |||||||||| |  |||| ||| | ||||||||||||| |||||||| |||||    
T  3854222 gctttcagttataatgactggtggcgacaccctttaatttgtatgggtgttagggagtagtcttctt 3854156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 192
Target Start/End: Complemental strand, 32590730 - 32590678
Alignment:
Q  140 cgctttcagttatactgactggtggtggaaccccttattatgtatgggtgtta 192  Q
    |||||||||||||| |||| |||||||| |||| ||| | |||||||||||||    
T  32590730 cgctttcagttataatgaccggtggtggcaccctttaatttgtatgggtgtta 32590678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 9740382 - 9740320
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttt 203  Q
    ||||||||||| | |||||| ||||||||||| ||||||||||||||| |||  |||||||||    
T  9740382 gctttcagttacaatgactgatggtggaaccctttattatgtatgggtattagagagtagttt 9740320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 140 - 206
Target Start/End: Complemental strand, 23636776 - 23636710
Alignment:
Q  140 cgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttct 206  Q
    ||||||||||||||  |||||||||  | |||| ||||||||||||||||||| ||||||| |||||    
T  23636776 cgctttcagttataacgactggtggatgcaccctttattatgtatgggtgttatggagtagatttct 23636710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 28211210 - 28211143
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttcttc 208  Q
    ||||||||||||| |||||| ||| || | || |||||||||| | |||||| |||||||||||||||    
T  28211210 gctttcagttataatgactgatggcggcatcctttattatgtacgtgtgttagggagtagttttcttc 28211143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 199
Target Start/End: Complemental strand, 30702471 - 30702412
Alignment:
Q  140 cgctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagta 199  Q
    |||||||||||||| |||||||||| || |||| ||| | ||||||||||||| ||||||    
T  30702471 cgctttcagttataatgactggtggcggcaccctttaatttgtatgggtgttatggagta 30702412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 6744410 - 6744476
Alignment:
Q  141 gctttcagttatactgactggtggtggaaccccttattatgtatgggtgttacggagtagttttctt 207  Q
    ||||||||||||| |||||||||| |  |||| ||| | ||||||||||||| |||||||| |||||    
T  6744410 gctttcagttataatgactggtggcgacacccgttaatttgtatgggtgttagggagtagtcttctt 6744476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University