View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18346_high_16 (Length: 237)
Name: NF18346_high_16
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 22682377 - 22682604
Alignment:
| Q |
1 |
cagaggccaaacatcagaaaaggtatctttaataata----gtcttttgatgtttggaagtgga---tgttcatttaaaagtagtggaaaacaaaaaaga |
93 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
22682377 |
cagaggccaaacctcagaaaaggtatctttaataataaatagtcttttgatgtttgcaagtggaacatattcatttaaaagtagtggaaaacaaaaaaga |
22682476 |
T |
|
| Q |
94 |
cttgttctaattttgacataaaaatttatatatttcagaggcagaaacgaatccttgatattaatcggaaaagggttaaggtggtgaaacctgccttttt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
22682477 |
cttgttctaattttgacataaaaatttatatatttcagaggcagaaacgaatccttgatattaatcggaaaagggttaagatggtgaaacctgccttttt |
22682576 |
T |
|
| Q |
194 |
tccaactacagaatttcgtgctagttat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
22682577 |
tccaactacagaatttcgtgctagttat |
22682604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 124
Target Start/End: Complemental strand, 21210147 - 21210036
Alignment:
| Q |
18 |
aaaaggtatcttt-aataatagtcttttgatgtttggaagtgga---tgttcatttaaaagtagtggaaaa-caaaaaagacttgttctaattttgacat |
112 |
Q |
| |
|
||||||||||||| |||||||| ||| || |||| |||| |||| | ||||||||||||| |||||| | ||||||||||| | |||||||||||||| |
|
|
| T |
21210147 |
aaaaggtatcttttaataatagacttatgctgttgggaattggaacatattcatttaaaagttgtggaatagcaaaaaagactagctctaattttgacat |
21210048 |
T |
|
| Q |
113 |
aaaaatttatat |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
21210047 |
aaaaatttatat |
21210036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 21210004 - 21209956
Alignment:
| Q |
140 |
acgaatccttgatattaatcggaaaagggttaaggtggtgaaacctgcc |
188 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |||||| |
|
|
| T |
21210004 |
acgaatccttgagattaacaagaaaagggttaaggtggtgaagcctgcc |
21209956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University