View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18346_high_2 (Length: 762)
Name: NF18346_high_2
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 140 - 558
Target Start/End: Complemental strand, 30000554 - 30000143
Alignment:
| Q |
140 |
acttatttatccctaaattaaataatgtaatcattatagattgaataacaaatgcaaaaatacatgtgttagattcacatgcatgttgcccattcaaagc |
239 |
Q |
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| T |
30000554 |
acttatttatccctaaattaaataatgtaatcatta--gattgaattacaaatgcaaaaatacatgtgttagattcacatgcatgttgctcattcaaagc |
30000457 |
T |
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| Q |
240 |
actaaagtgccaagaataatacattatacatatccccccaaaataaaaataaaattcagtgttacaa-taaacatgtaaaacaaacacattatcccccca |
338 |
Q |
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| T |
30000456 |
actaaagtgccaagaataatacattatacatatccccccaaaataaaa------ttcagtgttacaaataaacatgtaaaacaaacacattatcccccca |
30000363 |
T |
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| Q |
339 |
aaacatgaaacaataatatacagcctttgtcaacaaccaaagaaattgaaacactcttcaagtaacatagttgagtgggggattggatcctatattccct |
438 |
Q |
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| T |
30000362 |
aaacatgaaacaataatatacatcctttgtcaacaaccaaagaaattgaaacactcttcaagtaacatagttgagtgggggattggatcctttattccca |
30000263 |
T |
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| Q |
439 |
tttgctcaattctccaattagaattagaatataatataatatagagggctcacttaggtacataatgcccacttaagaaagaaacgataatttggttcct |
538 |
Q |
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| T |
30000262 |
ttttctcaattcaacaattagaattagaatataatataatagagaggtctctcttaggtacataatgcccactaaagaaagcaacgataatttggttcct |
30000163 |
T |
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| Q |
539 |
gaggaactattaacatgtca |
558 |
Q |
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| T |
30000162 |
gaggaactattaacatgtca |
30000143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 554 - 730
Target Start/End: Complemental strand, 30000101 - 29999930
Alignment:
| Q |
554 |
tgtcacaatgaggtttccaataccttatcaagctactatagaaataattttattcatattatctgttgttgtaaagattttttcatagttaatcaattac |
653 |
Q |
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| T |
30000101 |
tgtcacaatgaggtttccaataccttatcaagctattatagaaataattttattcatattatctgttgttgtaaagattttttcgtagttaatcaattac |
30000002 |
T |
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| Q |
654 |
attatggttatattggtgtttataagcaaaatagaaactaatttttaagataattgaaacatcatatagtctattaa |
730 |
Q |
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| T |
30000001 |
attatggttatattggtgtttataacc-----agaaactaatttttaagataattgaaacatcatatagtctattaa |
29999930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 30000687 - 30000588
Alignment:
| Q |
8 |
tgagatgaacacgtcttgaacataaacaagtcatttattaaaatggacataaaccggtcatcaaagaccataaatgaaatgaaaaattttaggacagtaa |
107 |
Q |
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| T |
30000687 |
tgagttgaacacgtattgaacataaatgagtcatttattaaaatggacataaaccggtcatcaaagaccataaacgaaatgaaaaattttaggacagtaa |
30000588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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