View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18346_high_8 (Length: 301)
Name: NF18346_high_8
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 14 - 165
Target Start/End: Original strand, 8833023 - 8833174
Alignment:
| Q |
14 |
cagtttccactaatccaattccaaataaaccagccaaaacagcaggtagcatcgaatactgtcccaaatcccctcgcaaaactctcgaaacatcggaaac |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8833023 |
cagtttccactaattcaattccaaataaaccagccaaaacagcaggtagcatcgaatactgtcccaaatcccctcgcaaaactctcgaaacatcggaaac |
8833122 |
T |
|
| Q |
114 |
cgatgaagatgatgatcgagcagaagcagcttctactcctaaacagaaattc |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8833123 |
cgatgaagatgatgatcgagcagaagcagcttctactcctaaacagaaattc |
8833174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University