View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18346_low_1 (Length: 846)

Name: NF18346_low_1
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18346_low_1
NF18346_low_1
[»] chr8 (11 HSPs)
chr8 (25-532)||(5985408-5985917)
chr8 (604-838)||(5985102-5985336)
chr8 (744-831)||(5960926-5961013)
chr8 (744-836)||(5949569-5949661)
chr8 (744-838)||(5921684-5921783)
chr8 (187-264)||(15945033-15945110)
chr8 (185-252)||(14418925-14418992)
chr8 (185-252)||(15069104-15069171)
chr8 (185-252)||(21481033-21481100)
chr8 (187-300)||(21034245-21034358)
chr8 (227-300)||(28891181-28891254)
[»] chr6 (4 HSPs)
chr6 (40-162)||(7325138-7325259)
chr6 (201-300)||(5165534-5165633)
chr6 (187-300)||(25942046-25942159)
chr6 (187-264)||(22351581-22351658)
[»] chr3 (7 HSPs)
chr3 (40-162)||(21334600-21334721)
chr3 (187-300)||(47882579-47882692)
chr3 (185-252)||(5192111-5192178)
chr3 (185-252)||(5886661-5886728)
chr3 (185-252)||(11168562-11168629)
chr3 (185-252)||(18098900-18098967)
chr3 (187-252)||(10958053-10958118)
[»] chr2 (4 HSPs)
chr2 (57-153)||(31658106-31658200)
chr2 (187-300)||(20054451-20054564)
chr2 (38-85)||(32014360-32014407)
chr2 (187-300)||(22716924-22717037)
[»] chr7 (7 HSPs)
chr7 (185-252)||(20297852-20297919)
chr7 (40-101)||(24454148-24454209)
chr7 (185-252)||(28486056-28486123)
chr7 (201-300)||(44016356-44016455)
chr7 (185-252)||(44725066-44725133)
chr7 (187-252)||(6046977-6047042)
chr7 (187-300)||(25351729-25351842)
[»] chr5 (3 HSPs)
chr5 (185-252)||(20043467-20043534)
chr5 (185-252)||(6745550-6745617)
chr5 (187-300)||(10627736-10627849)
[»] chr1 (7 HSPs)
chr1 (187-300)||(9522102-9522215)
chr1 (201-249)||(28223111-28223159)
chr1 (185-252)||(27338863-27338930)
chr1 (185-252)||(31424752-31424819)
chr1 (185-252)||(51750519-51750586)
chr1 (185-252)||(51758016-51758083)
chr1 (227-300)||(2400915-2400988)
[»] chr4 (10 HSPs)
chr4 (185-249)||(12743618-12743682)
chr4 (185-249)||(26558123-26558187)
chr4 (185-252)||(11008298-11008365)
chr4 (185-252)||(18311105-18311172)
chr4 (185-252)||(18409082-18409149)
chr4 (613-696)||(19533961-19534044)
chr4 (185-252)||(47563291-47563358)
chr4 (206-252)||(18537215-18537261)
chr4 (187-300)||(4558685-4558798)
chr4 (187-252)||(11435493-11435558)
[»] scaffold1674 (1 HSPs)
scaffold1674 (185-252)||(1182-1249)
[»] scaffold0127 (1 HSPs)
scaffold0127 (185-252)||(12605-12672)
[»] scaffold1899 (1 HSPs)
scaffold1899 (187-252)||(108-173)
[»] scaffold0209 (1 HSPs)
scaffold0209 (187-300)||(16726-16839)


Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 25 - 532
Target Start/End: Complemental strand, 5985917 - 5985408
Alignment:
Q  25 tattgggattgtattcttcttccttcatattgttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccac 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985917 tattgggattgtattcttcttccttcatattgttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccac 5985818  T
Q  125 gcatcaagtatca--gtgtgactctgtttgatttcacaacgactggctcccactgtgagagcaccatgggtaccaagggggacattgagaagtttatcag 222  Q
    ||||||||||| |  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985817 gcatcaagtattatagtgtgactctgtttaatttcacaacgactggctcccactgtgagagcaccatgggtaccaagggggacattgagaagtttatcag 5985718  T
Q  223 aagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaagggcgagtcgtttatgtcaacacat 322  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5985717 aagcaacgattttggattatggaaggtaaatatgagggcaatactaatcccacatatgtgtgtcgaagctttgaagggcgagtcgtttatgtcaacacat 5985618  T
Q  323 ataacaccaacaaagaagaatgagatgaatgataagtcaatcaatatcattatcttgtgtcttcaaggataccctagcaattatacaaatcttaatacga 422  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985617 ataacaccaacaaagaagaatgagatgaacgataagtcaatcaatatcattatcttgtgtcttcaaggataccctagcaattatacaaatcttaatacga 5985518  T
Q  423 acaattttcaaacattcatcacgtacttattcgccacccttgctagcaattatctactcactctattccaaaataaatgattttcttgaccattgcacac 522  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985517 acaattttcaaacattcatcacgtacttattcgccacccttgctagcaattatctactcactctattccaaaataaatgattttcttgaccattgcacac 5985418  T
Q  523 atgtcaatac 532  Q
    ||||||||||    
T  5985417 atgtcaatac 5985408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 604 - 838
Target Start/End: Complemental strand, 5985336 - 5985102
Alignment:
Q  604 gtcgatacgaatccaacaatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacatgatc 703  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5985336 gtcgatacgaattcaacaatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgcacataatc 5985237  T
Q  704 gacatttaattttcggaagggagtacttttataaggagcctacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgt 803  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5985236 gacatttaattttcggaagggagtacttttataaggagcggacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgt 5985137  T
Q  804 tgaattcaccacctcagtgcactcacaggttctgc 838  Q
    |||||||||||||||||||||||||||| ||||||    
T  5985136 tgaattcaccacctcagtgcactcacagtttctgc 5985102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 744 - 831
Target Start/End: Complemental strand, 5961013 - 5960926
Alignment:
Q  744 tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacag 831  Q
    ||||||| ||| | ||||||| || |||||||||||||||||||| ||||| |||| | ||||| |||||||||||||||||||||||    
T  5961013 taccttttatcaagtttccaaaaacctttatattgggccaccattgtacagtttccgcattgaagtcaccacctcagtgcactcacag 5960926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 744 - 836
Target Start/End: Complemental strand, 5949661 - 5949569
Alignment:
Q  744 tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttgaattcaccacctcagtgcactcacaggttct 836  Q
    ||||||| ||| ||||||||| || |||||||||||||||||||| ||||  |||||| |||| |||||||||| |||| |||||||| ||||    
T  5949661 taccttttatcaattttccaaaaacctttatattgggccaccattgtacaatttccacattgagttcaccaccttagtgtactcacagtttct 5949569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 744 - 838
Target Start/End: Complemental strand, 5921783 - 5921684
Alignment:
Q  744 tacctttgatctattttccaagaaactttatattgggccaccattatacagcttccacgttg-----aattcaccacctcagtgcactcacaggttctgc 838  Q
    ||||||| |||| || ||||| || |||||||||||||||||||| |||||||| | |||||     || ||||||||||||||||||||||| ||||||    
T  5921783 taccttttatctcttctccaaaaacctttatattgggccaccattgtacagcttacgcgttgaaattaaatcaccacctcagtgcactcacagtttctgc 5921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 15945033 - 15945110
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaat 264  Q
    ||||||| | ||| |||| ||||||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||    
T  15945033 catgggttcgaagtgggatattgagaagtttatcggtagtaacgacttcgggttatggaatgtaaagatgagggcaat 15945110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 14418992 - 14418925
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  14418992 accatgggttctaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 14418925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 15069104 - 15069171
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  15069104 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 15069171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 21481033 - 21481100
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  21481033 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 21481100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 21034245 - 21034358
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || || || |||||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  21034245 catgggttcgaagtgggatattgaaaagtttaccggtagtaaagactttgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 21034344  T
Q  287 gaagctttgaaggg 300  Q
    ||||| || |||||    
T  21034345 gaagcattaaaggg 21034358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 28891181 - 28891254
Alignment:
Q  227 aacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 300  Q
    ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| |||||| ||||| ||||||||    
T  28891181 aacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattgaaggg 28891254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 6e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 7325138 - 7325259
Alignment:
Q  40 cttcttccttcatattgttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatcagt 139  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||| ||| |||||  ||||| |||||||| |  ||    
T  7325138 cttcctccttcatattgttgtttacttttgttcaagattattattgcattccttttgtttttttgttgtcattgatttgatccacacatcaagtct-ggt 7325236  T
Q  140 gtgactctgtttgatttcacaac 162  Q
    ||||||||||| || ||||||||    
T  7325237 gtgactctgttcgaattcacaac 7325259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 5165633 - 5165534
Alignment:
Q  201 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 300  Q
    |||||||||||||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| |||||| ||||| ||||||||    
T  5165633 gggacattgagaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgttgaagcattgaaggg 5165534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 25942046 - 25942159
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  25942046 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 25942145  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  25942146 gaagcattgaaggg 25942159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 264
Target Start/End: Complemental strand, 22351658 - 22351581
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaat 264  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| |||||||| ||||||||||| |||||||||||    
T  22351658 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgactttgggttttggaaggtaaagatgagggcaat 22351581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 40 - 162
Target Start/End: Complemental strand, 21334721 - 21334600
Alignment:
Q  40 cttcttccttcatattgttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatcagt 139  Q
    |||| |||||| ||||| |||||||||||||| |||| ||||||||||||||||| || |||| |||||||| | ||| |||||  ||||||||||  |     
T  21334721 cttcctccttcgtattgctgtttacttttgtttaagattattattgcattccttttgg-ttttggttgccattggtttgctccatacatcaagtattggc 21334623  T
Q  140 gtgactctgtttgatttcacaac 162  Q
    |||||||||||||| || |||||    
T  21334622 gtgactctgtttgaattgacaac 21334600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 47882692 - 47882579
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  47882692 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 47882593  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  47882592 gaagcattgaaggg 47882579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 5192111 - 5192178
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  5192111 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 5192178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 5886661 - 5886728
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | | |  ||||||||||||||||||||||||||    
T  5886661 accatgggttcaaagtgggatattgagaagtttaccggtaataacgattttgggttatggaaggtaaa 5886728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 11168562 - 11168629
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  11168562 accatgggttcaaagtgggatattgagaagtttaccggagctaacgattttgggttatggaaggtaaa 11168629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 18098967 - 18098900
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  18098967 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 18098900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 10958118 - 10958053
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  10958118 catgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 10958053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 31658200 - 31658106
Alignment:
Q  57 ttgtttacttttgttcaagactattattgcattcctttaggttttttgttgccatcgattttctccacgcatcaagtatcagtgtgactctgtttga 153  Q
    ||||||| |||||||||||| ||||||||||||  ||| |  ||||||||| ||| ||||| |||||| ||||| ||||| |||| |||||||||||    
T  31658200 ttgtttaattttgttcaagattattattgcatttttttgg--tttttgttgtcattgatttgctccacacatcatgtatcggtgtaactctgtttga 31658106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 20054564 - 20054451
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  20054564 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 20054465  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  20054464 gaagcattgaaggg 20054451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 32014407 - 32014360
Alignment:
Q  38 ttcttcttccttcatattgttgtttacttttgttcaagactattattg 85  Q
    |||||||||||||||||| ||||||| ||||||||||||  |||||||    
T  32014407 ttcttcttccttcatattattgtttatttttgttcaagagaattattg 32014360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 22717037 - 22716924
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| ||||||     
T  22717037 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgtt 22716938  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  22716937 gaagcattgaaggg 22716924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 20297852 - 20297919
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| ||||   ||||||||||||||||||||||||||    
T  20297852 accatgggttcaaagtgggatattgagaagtttaccagagataacgattttgggttatggaaggtaaa 20297919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 24454148 - 24454209
Alignment:
Q  40 cttcttccttcatattgttgtttacttttgttcaagactattattgcattcctttaggtttt 101  Q
    |||||| |||||||||||| ||||  ||||| ||||| ||||||||||||||||| ||||||    
T  24454148 cttctttcttcatattgttctttatgtttgtgcaagattattattgcattccttttggtttt 24454209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 28486056 - 28486123
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  28486056 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 28486123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 44016455 - 44016356
Alignment:
Q  201 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 300  Q
    |||| ||||| ||||||| ||| || ||||| ||  |||| ||||||||||| ||||||||||| || || | ||||| |||||| ||||| ||||||||    
T  44016455 gggatattgaaaagtttaccagtagtaacgacttctggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattgaaggg 44016356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 44725066 - 44725133
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  44725066 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 44725133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 6046977 - 6047042
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||| | ||| |||| |||||||| |||||||||   || |||||||||||||||||||||||    
T  6046977 catgggtccaaagtgggatattgagaattttatcagagataatgattttgggttatggaaggtaaa 6047042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 25351729 - 25351842
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| ||||||     
T  25351729 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgtt 25351828  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  25351829 gaagcattgaaggg 25351842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 20043467 - 20043534
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||||| ||   ||||||||||||||||||||||||||    
T  20043467 accatgggttcgaagtgggatattgagaagtttatcggagataacgattttgggttatggaaggtaaa 20043534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 6745550 - 6745617
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  6745550 accatgggttcaaagagggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 6745617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 10627736 - 10627849
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| |||||||||||||| |||||||| || || | ||||| ||||||     
T  10627736 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaatataagggcaattctaattcaacaaaagtgtgtt 10627835  T
Q  287 gaagctttgaaggg 300  Q
    ||| | ||||||||    
T  10627836 gaaacattgaaggg 10627849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 9522102 - 9522215
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  9522102 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 9522201  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  9522202 gaagcattgaaggg 9522215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 201 - 249
Target Start/End: Complemental strand, 28223159 - 28223111
Alignment:
Q  201 gggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 249  Q
    |||| ||||||||||||| | |||| |||||||||||||||||||||||    
T  28223159 gggatattgagaagtttaccggaagtaacgattttgggttatggaaggt 28223111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 27338930 - 27338863
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  27338930 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 27338863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 31424819 - 31424752
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  31424819 accatgggttcgaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 31424752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 51750519 - 51750586
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  51750519 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 51750586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 51758016 - 51758083
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| ||||   ||||||||||||||||||||| ||||    
T  51758016 accatgggttcaaagtgggatattgagaagtttaccagagataacgattttgggttatggaagataaa 51758083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 227 - 300
Target Start/End: Complemental strand, 2400988 - 2400915
Alignment:
Q  227 aacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtcgaagctttgaaggg 300  Q
    ||||| || ||||| ||||||||||| ||||||||||| || || | ||||| |||||| ||||| ||||||||    
T  2400988 aacgacttcgggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgttgaagcattgaaggg 2400915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 12743682 - 12743618
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 249  Q
    ||||||||| | ||| |||| ||||||||||||| | |||  |||||||||||||||||||||||    
T  12743682 accatgggttcaaagtgggatattgagaagtttaccggaattaacgattttgggttatggaaggt 12743618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 249
Target Start/End: Original strand, 26558123 - 26558187
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggt 249  Q
    ||||||||| | ||| |||| || |||||||| | |||||| |||||||||||||||||||||||    
T  26558123 accatgggttcaaagtgggatatcgagaagttcaccagaagtaacgattttgggttatggaaggt 26558187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 11008365 - 11008298
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  11008365 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 11008298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 18311172 - 18311105
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  18311172 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 18311105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 18409149 - 18409082
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  18409149 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 18409082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 613 - 696
Target Start/End: Original strand, 19533961 - 19534044
Alignment:
Q  613 aatccaacaatatcttgcatgctacaatttgtctttatatgatggtagaataacatgatcaaagtatgttatgtaaataatgca 696  Q
    ||||||||||||||||  |||| ||||||||||||| |||  | |||||| || ||  |||||||||||||| | |||||||||    
T  19533961 aatccaacaatatcttatatgccacaatttgtctttgtatattagtagaaaaatattgtcaaagtatgttatatgaataatgca 19534044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 47563291 - 47563358
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| | || ||||||||||||| | || | ||||||||||||||||||||||||||    
T  47563291 accatgggttcgaagtgagatattgagaagtttaccggaggtaacgattttgggttatggaaggtaaa 47563358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 206 - 252
Target Start/End: Complemental strand, 18537261 - 18537215
Alignment:
Q  206 attgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||||||| | || | ||||||||||||||||||||||||||    
T  18537261 attgagaagtttaccggaggtaacgattttgggttatggaaggtaaa 18537215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 4558685 - 4558798
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| ||  |||| ||||||||||| ||||||||||| || || | ||||| ||||||     
T  4558685 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcaggttgtggaaggtaaagatgagggcaattctaattcaacaaaagtgtgtt 4558784  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  4558785 gaagcattgaaggg 4558798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 11435493 - 11435558
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||| | ||| |||| |||||||||||||   || | ||||||||||||||||||||||||||    
T  11435493 catgggttcaaagtgggatattgagaagtttactggaggtaacgattttgggttatggaaggtaaa 11435558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 1249 - 1182
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  1249 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 1182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 12672 - 12605
Alignment:
Q  185 accatgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||||| | ||| |||| ||||||||||||| | ||   ||||||||||||||||||||||||||    
T  12672 accatgggttcaaagtgggatattgagaagtttaccggagataacgattttgggttatggaaggtaaa 12605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1899 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1899
Description:

Target: scaffold1899; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 108 - 173
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaa 252  Q
    ||||||| | ||| |||| |||||||||||||   || | ||||||||||||||||||||||||||    
T  108 catgggttcaaagtgggatattgagaagtttactggaggtaacgattttgggttatggaaggtaaa 173  T

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Target: scaffold0209 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 16839 - 16726
Alignment:
Q  187 catgggtaccaagggggacattgagaagtttatcagaagcaacgattttgggttatggaaggtaaatatgagggcaatacttatcccacaaatgtgtgtc 286  Q
    ||||||| | ||| |||| ||||| ||||||| | | || ||||| || ||||| ||||||||||| |||||||||||  | || | ||||| ||||||     
T  16839 catgggttcgaagtgggatattgaaaagtttaccggtagtaacgacttcgggttgtggaaggtaaagatgagggcaattttaattcaacaaaagtgtgtt 16740  T
Q  287 gaagctttgaaggg 300  Q
    ||||| ||||||||    
T  16739 gaagcattgaaggg 16726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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