View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18346_low_13 (Length: 273)

Name: NF18346_low_13
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18346_low_13
NF18346_low_13
[»] chr3 (7 HSPs)
chr3 (35-273)||(26215163-26215401)
chr3 (91-273)||(35870278-35870459)
chr3 (100-273)||(48266209-48266380)
chr3 (156-273)||(52349726-52349842)
chr3 (35-77)||(346615-346657)
chr3 (35-79)||(5885643-5885687)
chr3 (35-79)||(10176721-10176765)
[»] chr4 (13 HSPs)
chr4 (39-273)||(5430592-5430829)
chr4 (35-273)||(34737825-34738061)
chr4 (39-273)||(53830531-53830767)
chr4 (35-269)||(21802776-21803008)
chr4 (35-268)||(21632800-21633032)
chr4 (104-273)||(2500670-2500838)
chr4 (156-273)||(2505027-2505143)
chr4 (169-273)||(46092315-46092419)
chr4 (169-273)||(46134840-46134944)
chr4 (35-126)||(26382347-26382438)
chr4 (124-273)||(20036251-20036399)
chr4 (40-78)||(27256664-27256702)
chr4 (35-79)||(43942135-43942179)
[»] chr8 (8 HSPs)
chr8 (36-273)||(20171837-20172074)
chr8 (35-228)||(11428188-11428381)
chr8 (36-273)||(8150517-8150752)
chr8 (35-273)||(10186234-10186470)
chr8 (35-269)||(4138197-4138436)
chr8 (35-98)||(32663986-32664048)
chr8 (237-273)||(918981-919017)
chr8 (35-98)||(9083128-9083190)
[»] chr7 (6 HSPs)
chr7 (36-273)||(44393547-44393784)
chr7 (39-273)||(47233848-47234079)
chr7 (156-273)||(25419601-25419717)
chr7 (156-273)||(39066896-39067012)
chr7 (156-273)||(5768090-5768206)
chr7 (39-79)||(47140378-47140418)
[»] scaffold0516 (1 HSPs)
scaffold0516 (36-273)||(3127-3363)
[»] chr5 (5 HSPs)
chr5 (35-273)||(37302014-37302250)
chr5 (39-273)||(21605093-21605324)
chr5 (156-273)||(36991043-36991159)
chr5 (35-126)||(11386778-11386869)
chr5 (35-79)||(10180446-10180490)
[»] chr2 (9 HSPs)
chr2 (35-273)||(41646734-41646968)
chr2 (156-273)||(7574117-7574233)
chr2 (156-273)||(16668712-16668828)
chr2 (237-273)||(43564239-43564275)
chr2 (35-98)||(6414332-6414394)
chr2 (36-78)||(29455086-29455128)
chr2 (237-273)||(29455449-29455485)
chr2 (39-79)||(29752926-29752966)
chr2 (35-79)||(37904093-37904137)
[»] chr1 (7 HSPs)
chr1 (44-257)||(23726066-23726278)
chr1 (91-273)||(22912554-22912735)
chr1 (156-273)||(13786229-13786345)
chr1 (156-273)||(25807798-25807914)
chr1 (35-78)||(39621653-39621696)
chr1 (91-129)||(23727848-23727886)
chr1 (35-75)||(29679056-29679096)
[»] chr6 (2 HSPs)
chr6 (156-273)||(13433479-13433595)
chr6 (39-79)||(16855932-16855972)
[»] scaffold0061 (1 HSPs)
scaffold0061 (35-78)||(46384-46427)
[»] scaffold0017 (1 HSPs)
scaffold0017 (35-78)||(152360-152403)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 26215163 - 26215401
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26215163 catgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 26215262  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  26215263 tgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatg 26215362  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  26215363 tgttataatccattttattaatagcgaggggttacattt 26215401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 35870278 - 35870459
Alignment:
Q  91 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaa 190  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |||||||||||||||| | ||||||||||||||| |||  |    
T  35870278 taactaatctctcatacttatgccatgtggctatcttttcttcttgattctttactagtcattccttactatcta-tctttcattttccatcagttgcga 35870376  T
Q  191 aaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||| |||| ||||||||||    
T  35870377 aaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgagaggttacattt 35870459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 100 - 273
Target Start/End: Original strand, 48266209 - 48266380
Alignment:
Q  100 tctcatacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctcc 199  Q
    ||||||||||||| ||||||||| |||||| ||||||||||||| |||| ||||||||||||||| || ||||||||||||||| ||| |||||||||||    
T  48266209 tctcatacttatgtcatgtggctatcttttcttcttgattctttactagtcattccttactatct-atctttcattttccatcagttgcaaaaactctcc 48266307  T
Q  200 atttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||| |||||||| ||||||||||| |||||  ||||||||||||||||||||| |||||||||||||||    
T  48266308 atttactt-acttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattt 48266380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 52349726 - 52349842
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  52349726 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 52349824  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  52349825 tattgaggggttacattt 52349842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 346615 - 346657
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaa 77  Q
    |||||||||||||||||||||| |||||||||||  |||||||    
T  346615 catgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 5885687 - 5885643
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| ||||  ||||||||||||||||    
T  5885687 catgtattctaacctacattttgcttacatgtcacttcaccaatg 5885643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 10176765 - 10176721
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||||||||||| | |||||||||| | |||||||    
T  10176765 catgtattctaaactacatttttcctatgtgtcaccttaccaatg 10176721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 39 - 273
Target Start/End: Original strand, 5430592 - 5430829
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  5430592 tattataaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaatttttcatacttatgccatgtggctctcttttgttcttgat 5430691  T
Q  139 tctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgtt 238  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  5430692 tctttactagccattccttactatctaatctttcatttcccatcaattggaaaaactctccatttacttcacttcatggaagttacacaatgaatgtatt 5430791  T
Q  239 ataatccattttat---taatagtgaggggttacattt 273  Q
    ||||||||||||||   |||||||||||||||||||||    
T  5430792 ataatccattttattaataatagtgaggggttacattt 5430829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 34738061 - 34737825
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| | |||||||||| | |||||||  | |||||  |||||||||||||||||||||||||||||| |||||||||||||    
T  34738061 catgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttatgccatgtggatctcttttgttct 34737963  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| ||||||||||| ||| ||||| | ||||||||||||||| ||| |||||| |||||| |||||||||||||| ||||||||||| |||||    
T  34737962 tgattctttactagccattccgtacaatcta-tctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacacaatgaatg 34737864  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
      ||||||||||||||||||| | |||||||||||||||    
T  34737863 cattataatccattttattaacaatgaggggttacattt 34737825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 53830767 - 53830531
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||||||| ||||||||| | |||||||||| | ||| |||    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  53830767 tattctaagctacatttttcctatgtgtcaccttaccgatgcccccctttt-taactaatctctcatacttatgccatgtggctatcttttgttcttgat 53830669  T
Q  139 tctttgctagccattccttactatcta---atttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    ||||| |||||| ||||||||||||||   || ||||||||||||||  ||| |||||| ||| ||||||||||||||||| ||||||||||| |||||     
T  53830668 tctttactagccgttccttactatctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacacaatgaatgc 53830569  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||| |||||||||||||||    
T  53830568 attataatccattttattaatattgaggggttacattt 53830531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 21802776 - 21803008
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||  | |||||||||| | |||||||    |||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  21802776 catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccaagtggctctcttttgttct 21802874  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| |||||||||| ||||||||| || |||||||| | |||| ||| ||||||  | ||||||||||||||| || ||||||||||| |||||    
T  21802875 tgattctttactagccattcattactatct-atctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatg 21802973  T
Q  235 tgttataatccattttattaatagtgaggggttac 269  Q
      ||||||||||||||||||||| |||||||||||    
T  21802974 cattataatccattttattaatattgaggggttac 21803008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 268
Target Start/End: Complemental strand, 21633032 - 21632800
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| | |||||||||| | ||||||     |||||  ||||||||||||||||||||||||| ||||| ||||||||||||    
T  21633032 catgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttc-taactaatctctcatacttatgccaagtggcgctcttttgttct 21632934  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattg-gaaaaactctccatttacttcacttcatggaagttacacaacgaat 233  Q
    ||||||||| |||||||||||||||||||| || |||||||||| |||| |||  ||||||  | ||||||||||||||| || ||||||||| | ||||    
T  21632933 tgattctttactagccattccttactatct-atctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatgaat 21632835  T
Q  234 gtgttataatccattttattaatagtgaggggtta 268  Q
    |  |||| |||||||||||||||| ||||||||||    
T  21632834 gcattatgatccattttattaatattgaggggtta 21632800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 273
Target Start/End: Complemental strand, 2500838 - 2500670
Alignment:
Q  104 atacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccattt 203  Q
    |||||||||||||||||||||||||||||||||||||  | |||  ||||||||||||| || | |||||||| |||||  ||| |||||  | ||||||    
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactattta-tctttcatttcccatccgttgcaaaaatacaccattt 2500740  T
Q  204 acttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||| ||||| ||||| |||||  ||||||||||||||||||||| || | ||||||||||    
T  2500739 acttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattt 2500670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 2505143 - 2505027
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  2505143 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 2505045  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  2505044 tattgaggggttacattt 2505027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 46092315 - 46092419
Alignment:
Q  169 tttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggtta 268  Q
    ||||||||||||||  ||  |||||||  ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  46092315 tttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggtta 46092414  T
Q  269 cattt 273  Q
    |||||    
T  46092415 cattt 46092419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 169 - 273
Target Start/End: Original strand, 46134840 - 46134944
Alignment:
Q  169 tttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggtta 268  Q
    ||||||||||||||  ||  |||||||  ||||||||||||||||||| ||||||||||| |||||  ||||||||||||||||||||| ||||||||||    
T  46134840 tttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatattgaggggtta 46134939  T
Q  269 cattt 273  Q
    |||||    
T  46134940 cattt 46134944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 26382347 - 26382438
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctct 126  Q
    |||||||||||| ||||||||| ||||  |||||| ||||||| | | ||| |||||||| |||||||||||||||||||||||||||||||    
T  26382347 catgtattctaagctacattttccttacatgtcacctcaccaaagctctccctttgtaaccaatctctcatacttatgccatgtggctctct 26382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 124 - 273
Target Start/End: Original strand, 20036251 - 20036399
Alignment:
Q  124 tcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaa-ctctccatttacttcacttcatggaagtt 222  Q
    |||||||||||| ||||||| |||| ||||| |||||||||| | |||||||| ||||||  || ||||| | || || ||||||||||||||| |||||    
T  20036251 tcttttgttctt-attctttactagtcattcattactatcta-tctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagtt 20036348  T
Q  223 acacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
     || || |||||  ||||||| ||||||||||||| ||||  |||||||||    
T  20036349 gcataatgaatgcattataattcattttattaatattgagcagttacattt 20036399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Original strand, 27256664 - 27256702
Alignment:
Q  40 attctaaactacattttacttatgtgtcacttcaccaat 78  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  27256664 attctaaactacactttacttatgtgtcacctcaccaat 27256702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 43942135 - 43942179
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| ||||  ||||||||||||||||    
T  43942135 catgtattctaatctacattttgcttacatgtcacttcaccaatg 43942179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 20171837 - 20172074
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||| | | ||||||||| ||||||||||||||||||||||    
T  20171837 atgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttctt 20171936  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  20171937 gattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgt 20172036  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||||||||||||| |||||    
T  20172037 attataatccattttattaatagtgaggggtttcattt 20172074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 35 - 228
Target Start/End: Complemental strand, 11428381 - 11428188
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| |||||||||||| |||| ||| ||| ||||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  11428381 catgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctctcttttgttct 11428282  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaa 228  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11428281 tgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaa 11428188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 36 - 273
Target Start/End: Complemental strand, 8150752 - 8150517
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||||||| ||||||||| | |||||||||| | |||||||    |||||  ||||||||||||||||||||||||||||| ||| |||||||||||    
T  8150752 atgtattctaagctacattttgcatatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccatgtgactcacttttgttctt 8150654  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| ||||||||| |||||||||| || |||||||| |||||| ||| |||||| ||||||||||||||||| |||  |||||||||| |||||     
T  8150653 gattctttactagccatttcttactatct-atctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgc 8150555  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     |||||||| |||||||||||| |||||||||||||||    
T  8150554 attataatcaattttattaatattgaggggttacattt 8150517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 35 - 273
Target Start/End: Original strand, 10186234 - 10186470
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||  | |||||||||| | |||||||    |||||  |||||||| |||| ||||||||||| ||| ||||||||||||||    
T  10186234 catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatatctcttacttatgccaagtgactctcttttgttct 10186332  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| |||| ||||||||||||||| || |||||||| | |||| ||| ||||||  | ||||||| ||||||| || ||||||||||| |||||    
T  10186333 tgattctttactagtcattccttactatct-atctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatgaatg 10186431  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
      ||||||||||||||||||||| |||||||||||||||    
T  10186432 cattataatccattttattaatattgaggggttacattt 10186470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 35 - 269
Target Start/End: Original strand, 4138197 - 4138436
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||  | |||||||||| | |||||||    |||||  ||||||||||||||||||||||||| ||||||||||||||||||    
T  4138197 catgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttc-taactaatctctcatacttatgccaagtggctctcttttgttct 4138295  T
Q  135 tgattctttgctagccattccttactatcta------atttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaa 228  Q
    ||||||||| ||||||||||  |||||||||      || |||||||| | |||  ||| ||||||  | ||||||||||||||| || |||||||||||    
T  4138296 tgattctttactagccattctctactatctatctttcatctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaagttacacaa 4138395  T
Q  229 cgaatgtgttataatccattttattaatagtgaggggttac 269  Q
     |||||  |||||||| |||||||||||| |||||||||||    
T  4138396 tgaatgcattataatctattttattaatattgaggggttac 4138436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 98
Target Start/End: Original strand, 32663986 - 32664048
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaat 98  Q
    |||||||||||||||||| ||| |||||||||||| |||||||| |||||| ||| ||||||||    
T  32663986 catgtattctaaactacactttgcttatgtgtcacctcaccaat-ttttccctttctaactaat 32664048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 919017 - 918981
Alignment:
Q  237 ttataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||||| |||||||||||||||    
T  919017 ttataatccattttattaatattgaggggttacattt 918981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 9083190 - 9083128
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaat 98  Q
    |||||||||||||||||| ||| |||||||||||| |||| ||| |||| ||||| ||||||||    
T  9083190 catgtattctaaactacactttgcttatgtgtcacctcactaatttttttctttt-taactaat 9083128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 44393547 - 44393784
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||| ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||||||| | | ||||||||| ||||||||||||||||||||||    
T  44393547 atgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctcttttgttctt 44393646  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| |||| |||| ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  44393647 gattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttacacaatgaatgt 44393746  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||||||||||||| |||||    
T  44393747 attataatccattttattaatagtgaggggtttcattt 44393784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 47234079 - 47233848
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||||||||||| ||||| | |||||||||||| |||||||    || ||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  47234079 tattctaaactatatttttcctatgtgtcactttaccaatgcc--ccctttctaactaatctctcatacttatgtcatgtggctatcttttgttcttgat 47233982  T
Q  139 tctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgtt 238  Q
    ||||| |||| |||||||||||||||| | ||||||||||||||| ||| |||||| || |||||||||||||||||| ||||||||||| |||||  ||    
T  47233981 tctttactagtcattccttactatcta-tctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcatt 47233883  T
Q  239 ataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||| | |||||||||||||    
T  47233882 ataatccattttattaatattaaggggttacattt 47233848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 25419717 - 25419601
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  25419717 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25419619  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  25419618 tattgaggggttacattt 25419601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 39067012 - 39066896
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  39067012 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 39066914  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  39066913 tattgaggggttacattt 39066896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 5768206 - 5768090
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||| ||||||||||    
T  5768206 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaa 5768108  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  5768107 tattgaggggttacattt 5768090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 47140378 - 47140418
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  47140378 tattctaaactacactttgcttatgtgtcacctcaccaatg 47140418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 273
Target Start/End: Original strand, 3127 - 3363
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttctt 135  Q
    ||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  136 gattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgt 235  Q
    |||||||| |||||||||| ||||||| | || |||||||| |||||| ||| |||||| || |||||||||||||||||| ||||| ||||| || ||     
T  3227 gattctttactagccattctttactat-ttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattga 3325  T
Q  236 gttataatccattttattaatagtgaggggttacattt 273  Q
     ||||||||||||||||||||| | || ||||||||||    
T  3326 attataatccattttattaatattaagcggttacattt 3363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 37302250 - 37302014
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||||||| ||||||||| | |||||||||| | |||||||  |||||||  |||||||||||| ||||||||||||||||| |||||||||||||    
T  37302250 catgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttc-taactaatctcttatacttatgccatgtggatctcttttgttct 37302152  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| ||||||||||| ||| ||||| | |||||||| |||||| ||| |||||| ||||||||||||||||||||| ||||||||||| |||||    
T  37302151 tgattctttactagccattccgtacaatcta-tctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatgaatg 37302053  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
      ||||||||||||||||||||| ||  |||||||||||    
T  37302052 cattataatccattttattaataatggagggttacattt 37302014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 273
Target Start/End: Complemental strand, 21605324 - 21605093
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgat 138  Q
    |||||||| ||||||||| | |||||||||| | ||||||     || ||| |||||||||||||||||||||| ||||||||| |||||||||||||||    
T  21605324 tattctaagctacatttttcctatgtgtcaccttaccaatacc--ccctttctaactaatctctcatacttatgtcatgtggctatcttttgttcttgat 21605227  T
Q  139 tctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgtt 238  Q
    |||||  ||| ||||||||||||||| || |||||||||||||    || |||||| || |||||||||||||||||| ||||||||||| |||||  ||    
T  21605226 tctttattagtcattccttactatct-atctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatgaatgcatt 21605128  T
Q  239 ataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||| |||||||||| ||||    
T  21605127 ataatccattttattaatattgaggggttaaattt 21605093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 36991043 - 36991159
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||| ||||||||||    
T  36991043 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaa 36991141  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  36991142 tattgaggggttacattt 36991159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 126
Target Start/End: Original strand, 11386778 - 11386869
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctct 126  Q
    |||||||||||| ||||||||| ||||  |||||| |||||||   | ||| |||||||| |||||||||||||||||||||||||||||||    
T  11386778 catgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 79
Target Start/End: Original strand, 10180446 - 10180490
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| |||||||||||| |||||||||    
T  10180446 catgtattctaacctacattttgcttatgtgtcacctcaccaatg 10180490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 35 - 273
Target Start/End: Complemental strand, 41646968 - 41646734
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttct 134  Q
    |||||||| ||| ||||||||| | |||||||||| | ||||||||   || ||| |||||||||||||||||||||||||||||||| |||||||||||    
T  41646968 catgtattataagctacatttttcctatgtgtcaccttaccaatgtcccccctttttaactaatctctcatacttatgccatgtggctatcttttgttct 41646869  T
Q  135 tgattctttgctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatg 234  Q
    ||||||||| ||||||||||||||||     || ||||||||||||||  ||| |||||| |||||||||||||| |||||| ||||||||||| |||||    
T  41646868 tgattctttactagccattccttactt----atctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaatg 41646773  T
Q  235 tgttataatccattttattaatagtgaggggttacattt 273  Q
    | || |||||||||||||||||| |||||||||||||||    
T  41646772 tattttaatccattttattaatattgaggggttacattt 41646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 7574233 - 7574117
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  7574233 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 7574135  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  7574134 tattgaggggttacattt 7574117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 16668828 - 16668712
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| |||||||| || |||||  |||||||||||||||||||    
T  16668828 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaa 16668730  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  16668729 tattgaggggttacattt 16668712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 43564239 - 43564275
Alignment:
Q  237 ttataatccattttattaatagtgaggggttacattt 273  Q
    ||||||||||||||||||||| |||||||||||||||    
T  43564239 ttataatccattttattaatattgaggggttacattt 43564275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 98
Target Start/End: Complemental strand, 6414394 - 6414332
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaat 98  Q
    |||||||||||||||||| ||| |||||||||||| |||| ||| |||| ||||| ||||||||    
T  6414394 catgtattctaaactacactttgcttatgtgtcacctcactaatttttttctttt-taactaat 6414332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 78
Target Start/End: Original strand, 29455086 - 29455128
Alignment:
Q  36 atgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    ||||||||||| ||||||||| | |||||||||||||||||||    
T  29455086 atgtattctaagctacatttttcctatgtgtcacttcaccaat 29455128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 29455449 - 29455485
Alignment:
Q  237 ttataatccattttattaatagtgaggggttacattt 273  Q
    |||||||||||||||||||||  ||||||||||||||    
T  29455449 ttataatccattttattaatatcgaggggttacattt 29455485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 29752926 - 29752966
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  29752926 tattctaaactacactttgcttatgtgtcacctcaccaatg 29752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 37904137 - 37904093
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||| ||||||||| | |||||||||| |||||||||    
T  37904137 catgtattctaagctacatttttcctatgtgtcacctcaccaatg 37904093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 257
Target Start/End: Complemental strand, 23726278 - 23726066
Alignment:
Q  44 taaactacattttacttatgtgtcacttcaccaatgttttccttttgtaactaatctctcatacttatgccatgtggctctcttttgttcttgattcttt 143  Q
    |||| ||||||||  ||||||||||||||||||  || | |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||    
T  23726278 taaattacattttgtttatgtgtcacttcaccagcgtctcccttttgtaactaatctctcatacttatgttatatggctctcttttgttcttgattcttt 23726179  T
Q  144 gctagccattccttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataat 243  Q
     || | ||||| ||||||||| || ||||||||| ||||  ||| |||||| || ||||||||||| |||||| ||||| ||||| |||||  |||||||    
T  23726178 actggtcattctttactatct-atctttcatttttcatctgttgcaaaaacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataat 23726080  T
Q  244 ccattttattaata 257  Q
    ||||||||||||||    
T  23726079 ccattttattaata 23726066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 273
Target Start/End: Complemental strand, 22912735 - 22912554
Alignment:
Q  91 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttgctagccattccttactatctaatttttcattttccatca-attgga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | || |||||||| ||||||  ||| |    
T  22912735 taactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattat-ttatctttcatttcccatcaggttgca 22912637  T
Q  190 aaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaatagtgaggggttacattt 273  Q
     |||| |||||||||||||||||| || | |||||| || |||||  |||||| |||||||||||||| ||||| |||||||||    
T  22912636 gaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattt 22912554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 13786229 - 13786345
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  13786229 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13786327  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  13786328 tattgaggggttacattt 13786345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 25807914 - 25807798
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||||||  ||||||| |||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  25807914 ttactatcta-tctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 25807816  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  25807815 tattgaggggttacattt 25807798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 39621653 - 39621696
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    |||||||||||||||||| ||| |||||||||||| ||||||||    
T  39621653 catgtattctaaactacactttgcttatgtgtcacctcaccaat 39621696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 23727886 - 23727848
Alignment:
Q  91 taactaatctctcatacttatgccatgtggctctctttt 129  Q
    |||| |||||||||||||||||||| |||||||||||||    
T  23727886 taaccaatctctcatacttatgccaagtggctctctttt 23727848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Original strand, 29679056 - 29679096
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcacc 75  Q
    |||||||||||||||||| ||| |||||||||||| |||||    
T  29679056 catgtattctaaactacactttgcttatgtgtcacctcacc 29679096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 156 - 273
Target Start/End: Complemental strand, 13433595 - 13433479
Alignment:
Q  156 ttactatctaatttttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaacgaatgtgttataatccattttattaa 255  Q
    |||||||||| | ||||||||||||||| ||  |||||||||||||||||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  13433595 ttactatcta-tctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaa 13433497  T
Q  256 tagtgaggggttacattt 273  Q
    || |||||||||||||||    
T  13433496 tattgaggggttacattt 13433479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 16855932 - 16855972
Alignment:
Q  39 tattctaaactacattttacttatgtgtcacttcaccaatg 79  Q
    |||||||||||||||||| ||||  ||||||||||||||||    
T  16855932 tattctaaactacattttgcttacatgtcacttcaccaatg 16855972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Complemental strand, 46427 - 46384
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||    
T  46427 catgtattctaagctacactttacttatgtgtcacctcaccaat 46384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 152360 - 152403
Alignment:
Q  35 catgtattctaaactacattttacttatgtgtcacttcaccaat 78  Q
    |||||||||||| ||||| |||||||||||||||| ||||||||    
T  152360 catgtattctaagctacactttacttatgtgtcacctcaccaat 152403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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