View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18346_low_2 (Length: 820)
Name: NF18346_low_2
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 691; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 691; E-Value: 0
Query Start/End: Original strand, 18 - 805
Target Start/End: Complemental strand, 18644173 - 18643379
Alignment:
| Q |
18 |
atctgtaaccgttgtgaagttcgttttaatgatctattgtcgaaggtttacaaacgagattgtaaaagcgtatgcgcaggatcattgttttgatgttatt |
117 |
Q |
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||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||| |
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| T |
18644173 |
atctgtaaccgttgtgaagttcgttttaatggtatactgtcgaaggtttacaaacgagattgtaaaagcctatgcgcaggatcactgtttcgatgttatt |
18644074 |
T |
|
| Q |
118 |
accaattcagtcggattagctgctgctgtgttagctgtcaagttctattggtggattgatccattgggagctattattgtgagttcattactaccactaa |
217 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18644073 |
actaattcagttggattagctgctgctgtgttagctgtcaagttctattggtggattgatccattgggagctattattgtgagttcgttactaccactaa |
18643974 |
T |
|
| Q |
218 |
atggattttatagttagtaatctcaaatttagttt--------cactagtcttacatattttccttgacttgcacctaattcctcaagtaaactagtaat |
309 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18643973 |
atggattttatagttagtaatctctaatttagtttgcatatttcactagtcttacatattttccttgacttgcacctaattcctcaagtaaactagtaat |
18643874 |
T |
|
| Q |
310 |
tatttctgggacacggattccttgcaataacaagaaataatcaatcccatccattatttttagatcttatggctcagatcgcacaatcactaaatcagtt |
409 |
Q |
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|||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18643873 |
tatttctggggcacggattccttgcaacaacaagcaataatcaatcccatccattatttttagatcttatggctcagatcgcacaatcactaaatcagtt |
18643774 |
T |
|
| Q |
410 |
ttaaacaatctcgatcattgatttagataagacagtcgagttttgcagggaattgattttgtctgtagacgcgcccactctcctactttgtccctcatgt |
509 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18643773 |
ttaaacaatctcgatcattgatttagataagacaatcgagttttgcagggaattcattttgtctgtagacgcgcccactctcctactttgtccctcatgt |
18643674 |
T |
|
| Q |
510 |
attgtcatttatgtctcgttttttcaaatttgtcctataagtgcgtaacgttctgtatcattatataatagcgtagactaatgaaataggtgtcacaaga |
609 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18643673 |
attgtcatttatgtctcgttttttcaaatttgtcctataagtgcgtaacgttctgtatcattat-taatagcgtagactaatgaaataggtgtcacaaga |
18643575 |
T |
|
| Q |
610 |
cattagcgactacttgttatttttgtttacttgtggacaaagtaagagtgtgtaagttcatgaacaaaattgatggtttattcgttatttattaccgcca |
709 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18643574 |
cattagcgactacttgttatttttgtttacttgtggacaaagtaagagtgtgtaagttcatgaacaaaattgatggtttattcgttatttattaccgcca |
18643475 |
T |
|
| Q |
710 |
gtcagtttcatgattgatctaatgactatgatattgtgaatgccgaatgcagatagcactgtacacaattaatacatgggtgaagacagtgattga |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18643474 |
gtcagtttcatgattgatctaatgactatgatattgtgaataccgaatgtagatagcactgtacacaattaatacatgggtgaagacagtgattga |
18643379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 31 - 202
Target Start/End: Complemental strand, 27308819 - 27308648
Alignment:
| Q |
31 |
gtgaagttcgttttaatgatctattgtcgaaggtttacaaacgagattgtaaaagcgtatgcgcaggatcattgttttgatgttattaccaattcagtcg |
130 |
Q |
| |
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||||||||| || | ||||||||||||||||| |||| ||| || ||||| | ||| ||||| || ||||||| ||| ||||| ||||| ||||| || | |
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| T |
27308819 |
gtgaagttcattcttatgatctattgtcgaagatttaaaaatgaaattgtcagagcatatgcacaagatcattttttcgatgtcattactaattctgttg |
27308720 |
T |
|
| Q |
131 |
gattagctgctgctgtgttagctgtcaagttctattggtggattgatccattgggagctattattgtgagtt |
202 |
Q |
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||||||| |||||||| ||||||||||||||| |||||||| |||||| ||||||||| |||| |||| |
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| T |
27308719 |
gattagccgctgctgttctagctgtcaagttcttctggtggatggatccaacaggagctattcttgtaagtt |
27308648 |
T |
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