View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18346_low_5 (Length: 498)

Name: NF18346_low_5
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18346_low_5
NF18346_low_5
[»] scaffold0190 (1 HSPs)
scaffold0190 (1-306)||(41-344)
[»] scaffold0914 (1 HSPs)
scaffold0914 (302-486)||(325-509)
[»] chr7 (18 HSPs)
chr7 (262-485)||(26008847-26009072)
chr7 (239-428)||(20912246-20912435)
chr7 (239-486)||(26150232-26150476)
chr7 (239-351)||(11775750-11775862)
chr7 (239-483)||(15002561-15002797)
chr7 (239-318)||(8325679-8325758)
chr7 (1-64)||(3135673-3135736)
chr7 (1-61)||(16206582-16206642)
chr7 (256-341)||(16195347-16195431)
chr7 (11-86)||(19381460-19381536)
chr7 (107-330)||(3135394-3135611)
chr7 (267-329)||(13767151-13767213)
chr7 (12-52)||(19065780-19065820)
chr7 (1-52)||(4072571-4072622)
chr7 (256-303)||(15814266-15814313)
chr7 (12-49)||(14302445-14302482)
chr7 (11-52)||(44307261-44307302)
chr7 (164-227)||(19065580-19065644)
[»] chr2 (21 HSPs)
chr2 (106-437)||(28772496-28772823)
chr2 (267-484)||(24533546-24533763)
chr2 (163-484)||(21651927-21652244)
chr2 (284-486)||(30621690-30621889)
chr2 (284-486)||(30624311-30624510)
chr2 (285-464)||(30667492-30667669)
chr2 (267-424)||(24301108-24301262)
chr2 (239-486)||(34898479-34898709)
chr2 (239-428)||(22575083-22575266)
chr2 (267-355)||(20509489-20509576)
chr2 (267-353)||(18994473-18994559)
chr2 (11-82)||(28772864-28772935)
chr2 (273-339)||(17739299-17739367)
chr2 (158-231)||(24382107-24382180)
chr2 (1-52)||(24382323-24382374)
chr2 (158-231)||(18533677-18533751)
chr2 (11-69)||(20271404-20271462)
chr2 (262-340)||(27401933-27402009)
chr2 (11-52)||(29112309-29112350)
chr2 (167-227)||(45620211-45620272)
chr2 (142-226)||(24839708-24839792)
[»] chr3 (34 HSPs)
chr3 (101-429)||(3295072-3295394)
chr3 (107-486)||(11834444-11834820)
chr3 (239-486)||(10932641-10932886)
chr3 (256-486)||(21662592-21662822)
chr3 (313-484)||(10832774-10832946)
chr3 (107-486)||(27049421-27049796)
chr3 (240-376)||(12793626-12793762)
chr3 (113-329)||(8022075-8022288)
chr3 (247-451)||(10724573-10724775)
chr3 (118-231)||(25487541-25487655)
chr3 (239-317)||(25688988-25689066)
chr3 (267-326)||(8853968-8854027)
chr3 (1-64)||(24901485-24901548)
chr3 (239-313)||(25661200-25661274)
chr3 (239-313)||(25667605-25667679)
chr3 (239-313)||(25674010-25674084)
chr3 (239-313)||(25680684-25680758)
chr3 (267-311)||(6808615-6808659)
chr3 (12-60)||(4655633-4655681)
chr3 (242-327)||(15046913-15046999)
chr3 (1-64)||(20419284-20419348)
chr3 (22-65)||(3294975-3295018)
chr3 (267-313)||(15855592-15855638)
chr3 (239-312)||(19633658-19633731)
chr3 (267-316)||(38278469-38278518)
chr3 (267-331)||(24901758-24901821)
chr3 (1-52)||(5230168-5230219)
chr3 (11-86)||(8602788-8602862)
chr3 (1-60)||(11834319-11834378)
chr3 (1-52)||(38377867-38377918)
chr3 (267-312)||(17216436-17216481)
chr3 (11-52)||(25105937-25105978)
chr3 (292-353)||(17760695-17760752)
chr3 (292-353)||(19062015-19062072)
[»] chr4 (19 HSPs)
chr4 (239-484)||(11774401-11774644)
chr4 (107-287)||(20597674-20597852)
chr4 (239-355)||(6407381-6407496)
chr4 (241-486)||(21957854-21958102)
chr4 (248-349)||(5889532-5889633)
chr4 (11-104)||(19855318-19855413)
chr4 (239-330)||(9197348-9197439)
chr4 (185-351)||(12452672-12452842)
chr4 (206-351)||(19076084-19076227)
chr4 (239-339)||(17957296-17957395)
chr4 (129-335)||(19855455-19855660)
chr4 (363-485)||(14615831-14615951)
chr4 (1-97)||(20597549-20597647)
chr4 (14-86)||(12452483-12452554)
chr4 (256-320)||(31933562-31933626)
chr4 (1-52)||(9650390-9650441)
chr4 (262-311)||(9219852-9219901)
chr4 (11-56)||(17377837-17377882)
chr4 (297-354)||(5373017-5373070)
[»] chr8 (25 HSPs)
chr8 (107-379)||(23638010-23638279)
chr8 (107-485)||(24382273-24382653)
chr8 (335-486)||(24554867-24555018)
chr8 (107-379)||(18822519-18822790)
chr8 (107-340)||(24622508-24622739)
chr8 (190-485)||(17624920-17625218)
chr8 (206-331)||(24551835-24551957)
chr8 (163-329)||(23539159-23539324)
chr8 (267-477)||(25280261-25280469)
chr8 (267-341)||(16227885-16227958)
chr8 (267-383)||(22883323-22883438)
chr8 (2-62)||(17624719-17624779)
chr8 (1-68)||(24382710-24382777)
chr8 (246-383)||(9894203-9894338)
chr8 (289-379)||(20503087-20503172)
chr8 (267-329)||(17984503-17984565)
chr8 (107-227)||(18120126-18120243)
chr8 (12-64)||(18120013-18120065)
chr8 (267-339)||(25261548-25261619)
chr8 (239-351)||(21675657-21675769)
chr8 (267-329)||(14400218-14400279)
chr8 (11-52)||(20178022-20178063)
chr8 (11-52)||(20222749-20222790)
chr8 (298-335)||(22319859-22319896)
chr8 (303-335)||(23216894-23216926)
[»] chr6 (20 HSPs)
chr6 (163-486)||(14352387-14352707)
chr6 (239-485)||(5486591-5486841)
chr6 (241-485)||(12974726-12974973)
chr6 (256-351)||(19981343-19981437)
chr6 (239-379)||(19991970-19992108)
chr6 (106-373)||(6777629-6777895)
chr6 (1-104)||(9519931-9520037)
chr6 (245-376)||(11848470-11848602)
chr6 (11-64)||(5486359-5486412)
chr6 (267-328)||(19729238-19729299)
chr6 (239-334)||(19978651-19978746)
chr6 (1-52)||(16374524-16374575)
chr6 (1-52)||(31162903-31162954)
chr6 (298-355)||(13192061-13192116)
chr6 (1-50)||(4173714-4173763)
chr6 (1-50)||(4229323-4229372)
chr6 (162-329)||(12478405-12478570)
chr6 (297-329)||(4174611-4174643)
chr6 (142-226)||(16374323-16374407)
chr6 (257-320)||(20891735-20891798)
[»] scaffold0008 (1 HSPs)
scaffold0008 (239-485)||(235407-235646)
[»] chr5 (16 HSPs)
chr5 (111-485)||(22911004-22911366)
chr5 (109-476)||(39606755-39607116)
chr5 (121-339)||(22949443-22949658)
chr5 (206-378)||(24191987-24192158)
chr5 (163-358)||(10178938-10179125)
chr5 (242-339)||(25340648-25340745)
chr5 (262-341)||(20846574-20846653)
chr5 (239-329)||(17362437-17362527)
chr5 (239-416)||(19266528-19266698)
chr5 (1-64)||(21297921-21297984)
chr5 (267-347)||(19318397-19318475)
chr5 (1-64)||(21311464-21311527)
chr5 (26-82)||(24192307-24192363)
chr5 (239-308)||(22447030-22447098)
chr5 (297-378)||(22433226-22433308)
chr5 (3-52)||(20456145-20456194)
[»] chr1 (13 HSPs)
chr1 (239-486)||(21199489-21199735)
chr1 (245-423)||(20406301-20406476)
chr1 (256-379)||(21416926-21417048)
chr1 (107-231)||(17614485-17614609)
chr1 (246-355)||(18623730-18623837)
chr1 (185-320)||(15807031-15807165)
chr1 (267-313)||(30821605-30821651)
chr1 (270-313)||(22612176-22612219)
chr1 (11-52)||(78102-78143)
chr1 (11-52)||(20192271-20192312)
chr1 (158-225)||(20820768-20820836)
chr1 (267-348)||(23601139-23601215)
chr1 (296-353)||(40438175-40438228)
[»] scaffold0196 (1 HSPs)
scaffold0196 (285-423)||(18870-19008)
[»] scaffold0333 (1 HSPs)
scaffold0333 (162-355)||(4276-4467)
[»] scaffold0615 (1 HSPs)
scaffold0615 (239-383)||(4915-5058)
[»] scaffold0118 (1 HSPs)
scaffold0118 (249-352)||(17376-17477)
[»] scaffold0018 (1 HSPs)
scaffold0018 (239-423)||(50242-50424)
[»] scaffold0064 (1 HSPs)
scaffold0064 (245-474)||(6764-6985)
[»] scaffold0058 (1 HSPs)
scaffold0058 (239-320)||(79038-79121)
[»] scaffold0003 (1 HSPs)
scaffold0003 (239-355)||(218095-218210)
[»] scaffold0035 (2 HSPs)
scaffold0035 (11-61)||(38239-38289)
scaffold0035 (137-328)||(64234-64421)
[»] scaffold1121 (1 HSPs)
scaffold1121 (270-329)||(2567-2626)
[»] scaffold0112 (1 HSPs)
scaffold0112 (289-379)||(18736-18826)
[»] scaffold1885 (1 HSPs)
scaffold1885 (270-348)||(893-970)
[»] scaffold0005 (1 HSPs)
scaffold0005 (363-485)||(201426-201546)
[»] scaffold0498 (1 HSPs)
scaffold0498 (289-354)||(5029-5094)
[»] scaffold0347 (1 HSPs)
scaffold0347 (11-64)||(3868-3921)
[»] scaffold0299 (1 HSPs)
scaffold0299 (107-236)||(10294-10426)
[»] scaffold0007 (1 HSPs)
scaffold0007 (239-312)||(211812-211885)
[»] scaffold0126 (1 HSPs)
scaffold0126 (248-307)||(17614-17673)
[»] scaffold0508 (1 HSPs)
scaffold0508 (278-328)||(5760-5810)
[»] scaffold0431 (1 HSPs)
scaffold0431 (267-368)||(13996-14099)
[»] scaffold0282 (2 HSPs)
scaffold0282 (267-340)||(21182-21255)
scaffold0282 (389-455)||(21290-21356)
[»] scaffold0111 (1 HSPs)
scaffold0111 (269-329)||(34146-34206)
[»] scaffold0014 (1 HSPs)
scaffold0014 (107-175)||(201957-202025)
[»] scaffold0613 (1 HSPs)
scaffold0613 (262-355)||(2945-3036)
[»] scaffold0115 (1 HSPs)
scaffold0115 (11-86)||(19828-19903)
[»] scaffold0032 (1 HSPs)
scaffold0032 (262-320)||(80486-80544)
[»] scaffold0808 (1 HSPs)
scaffold0808 (275-355)||(5551-5632)
[»] scaffold0135 (1 HSPs)
scaffold0135 (262-311)||(30503-30552)


Alignment Details
Target: scaffold0190 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 344 - 41
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatgagtttgatgatgatttcaa 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  344 tgaattgtgattgttgggttaattaggctaaatgaggaataaggtgggtaattcttatattgatagatcttatgaatgatgagtttgatgatgatttcaa 245  T
Q  101 gtatcttgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  244 gtatcttgatagaagtatgataacatgatttgcattgaactgaggataatatttagttgatgttagtattctagggatgtttggtatgcatatgtgatat 145  T
Q  201 gaatgaatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtat 300  Q
    ||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  144 gaatgaatccttgaatgtttatgtttgattatactt--taattatgaattgtgagctaacccccattggtcatttggttgactgcctaccttattcgtat 47  T
Q  301 ggatgg 306  Q
    ||||||    
T  46 ggatgg 41  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0914 (Bit Score: 177; Significance: 3e-95; HSPs: 1)
Name: scaffold0914
Description:

Target: scaffold0914; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 302 - 486
Target Start/End: Original strand, 325 - 509
Alignment:
Q  302 gatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagatt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  325 gatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagact 424  T
Q  402 ttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  425 ttagggctctgattaggggtcggtctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatgatgat 509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 262 - 485
Target Start/End: Original strand, 26008847 - 26009072
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagttt-gctttgctttggtgagttgcttgagattag 360  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| ||| |||||||||||||||||||||||||  |||    
T  26008847 cccagtggtcgtttggttgaccgcctaccttattcgtatggatgggtagatggcgtgcatgaataattttgctttgctttggtgagttgcttgaggatag 26008946  T
Q  361 cgtggagctacctcgtttactgcattt-cggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggaga 459  Q
    | || |||||||||||||||||||||| ||||||||| || ||||||||| ||||||||||||| ||| || |||||| ||||||||| ||| |||||||    
T  26008947 cttgaagctacctcgtttactgcattttcggtgtctttgactttagggctttgattaggggtcggtctgtgatgtttatctttattatttctattggaga 26009046  T
Q  460 tttttgagaccatgtatttatgatga 485  Q
    |||||||||| ||||||| |||||||    
T  26009047 tttttgagactatgtattgatgatga 26009072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 239 - 428
Target Start/End: Original strand, 20912246 - 20912435
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||||||| ||||| ||||   || ||||||||||| |||||||||||||||||||||| |||||||| ||||| || ||||||||||||||    
T  20912246 taattgtgaattgtgaactaacccccagctgttgtttggttgaccgcctaccttattcgtatggatgagtagacggtgtgcatgactagtttgctttgct 20912345  T
Q  339 ttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctt 428  Q
    |||||||||||||||||  |||| |||| |||||| |||||||| |||||||||| ||||||  |||||||||||||||||||||| ||||    
T  20912346 ttggtgagttgcttgaggatagcttggatgctaccccgtttactacatttcggtggcttaga-cttagggctctgattaggggtcggtctt 20912435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 239 - 486
Target Start/End: Original strand, 26150232 - 26150476
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||||||| ||||| || | || ||||||| |||||  |||||||||||| | || |||||||||||||||||| || ||||||||||||||    
T  26150232 taattgtgaattgtgaactaacccctagtgatcgtttgattgaccacctaccttattc-tctgaatgggtagacggcgtgcaagactagtttgctttgct 26150330  T
Q  339 ttggtgagttgcttgagattagcgtgga-gctacctcg-tttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgttt 436  Q
    ||||||||| |||||||  |||| |||| ||||||| | |||||||| ||| ||||||||||| ||||||||||||||||||||||| |||||| || ||    
T  26150331 ttggtgagtagcttgaggatagcttggatgctaccttgttttactgc-ttttggtgtcttagactttagggctctgattaggggtcggtctttgatg-tt 26150428  T
Q  437 acctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    | |||||||||  ||||| |||| ||||||||| ||||| | ||||||||    
T  26150429 atctttattat-actgtt-gagaattttgagactatgtactgatgatgat 26150476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 239 - 351
Target Start/End: Original strand, 11775750 - 11775862
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    |||||||||| ||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||       
T  11775750 taattatgaaatgtgaactaacccccagtggtcgtttggttgaccgcctaccttattcgtatggatggctagatggcgtgcaggactagtttgctttagc 11775849  T
Q  339 ttggtgagttgct 351  Q
    |||||||||||||    
T  11775850 ttggtgagttgct 11775862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 239 - 483
Target Start/End: Original strand, 15002561 - 15002797
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| |||||  ||| ||||||||||||||||||||| |||||| ||| ||||||||||||| | ||||| |||||  |||||||       
T  15002561 taattttgaattatgaactaacctccagtggtcgtttggttgactgccttccttatccgtgtggatgggtagactgtgtgcaagaataaattgcttta-- 15002658  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttac 438  Q
       ||||||||||||||  |||| ||||||||||||||||| ||| ||| || |||||||| |||||||||||||| ||||||||  ||| |  |||||     
T  15002659 ---gtgagttgcttgaggatagcttggagctacctcgtttattgc-ttttggcgtcttaga-tttagggctctgataaggggtcgcccttcgacgtttat 15002753  T
Q  439 ctttattatgtctgttggagatttttgagaccatgtatttatgat 483  Q
    ||||||||||| ||||| | | ||||||||| ||||||| |||||    
T  15002754 ctttattatgtttgttgaata-ttttgagactatgtattgatgat 15002797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 318
Target Start/End: Original strand, 8325679 - 8325758
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtg 318  Q
    |||| ||||||||||| ||||| || | |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8325679 taatcatgaattgtgaactaacccctagtggtcgtttggttgaccgcctaccttattcgtatggatgggtagacggcgtg 8325758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 3135736 - 3135673
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  3135736 tgaattgtatttgttgagttaattatgctaaatgaggaataaggtgagtaatttttatattgat 3135673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 16206642 - 16206582
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatatt 61  Q
    ||||||||  ||||||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  16206642 tgaattgtacttgttgacttaattatgctaaatgacgaataaggtgagtaattcttatatt 16206582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 16195431 - 16195347
Alignment:
Q  256 ctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttg 341  Q
    ||||| |||| |||||||||||||||| ||||||||||||  || |||||||||| ||| |||||||| ||| | |||||||||||    
T  16195431 ctaacccccaatggtcgtttggttgaccgcctaccttatttttaaggatgggtaggcggtgtgcaggattag-tcgctttgctttg 16195347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 19381536 - 19381460
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatctt-atgaatgatgagttt 86  Q
    |||||||||| ||||||||||||| ||||||||||||||||| |||  |||||| ||| || || ||||||||||||    
T  19381536 ttgttgagttgattaggctaaatgtggaataaggtgagtaatcctttcattgattgatgttgataaatgatgagttt 19381460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 330
Target Start/End: Complemental strand, 3135611 - 3135394
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    ||||||||||||||||||||||||    ||||||||||| | |||| |   ||||||||||||||||||   | |  ||||| ||||||| |||| ||||    
T  3135611 tgatagaagtatgataacatgattaatgttgaactgggg-tgatatatgtgtgatgttagtattctaggagggatgtgtatgtatatgtgttatgcatga 3135513  T
Q  207 a-tccttgaatgtttatgtttgattagactttataattatgaa-ttgtga-gctaactcccattggtcgtttggttgactgcctaccttattcgtatgga 303  Q
    | ||||| |||| ||||| |||  ||  |||   ||||||||| |||||| ||||||||||| |||||||||||||||| ||||||| |||| ||||| |    
T  3135512 aatccttaaatgcttatgcttgtctatgctt---aattatgaagttgtgaagctaactcccagtggtcgtttggttgaccgcctacc-tatttgtatgaa 3135417  T
Q  304 tgggtagacggcgtgcaggaatagttt 330  Q
    ||    ||||||||||| |||||||||    
T  3135416 tg----gacggcgtgcatgaatagttt 3135394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 13767151 - 13767213
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    |||||||||||||||| | | ||||||||||| ||||||||||||||| ||||| || |||||    
T  13767151 tggtcgtttggttgaccgtcaaccttattcgtgtggatgggtagacggtgtgcatgattagtt 13767213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 19065820 - 19065780
Alignment:
Q  12 tgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||||| || ||||||||||||||||||||||||||    
T  19065820 tgttgagttaagtatgctaaatgaggaataaggtgagtaat 19065780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4072571 - 4072622
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  ||||| ||||||||| ||||||||| ||||||||||||||||    
T  4072571 tgaattgtacttgttaagttaattatgctaaatgaagaataaggtgagtaat 4072622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 303
Target Start/End: Original strand, 15814266 - 15814313
Alignment:
Q  256 ctaactcccattggtcgtttggttgactgcctaccttattcgtatgga 303  Q
    ||||| |||| ||| |||||||||||| ||||||||||||||||||||    
T  15814266 ctaacccccagtggacgtttggttgaccgcctaccttattcgtatgga 15814313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 14302445 - 14302482
Alignment:
Q  12 tgttgagttaattaggctaaatgaggaataaggtgagt 49  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  14302445 tgttgagttgattaggctaaatgaggaatgaggtgagt 14302482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 44307261 - 44307302
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  44307261 ttgttgagttaagtatgctaaatgaagaataaggtgagtaat 44307302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 19065644 - 19065580
Alignment:
Q  164 tagtattctagggatgtttggtatgcatatgtgatatgaatg-aatccttgaatgtttatgtttg 227  Q
    |||||||||||| |||||  ||||| |||||||||||| ||| ||||||| |||| |||||||||    
T  19065644 tagtattctaggaatgttgagtatgtatatgtgatatgcatgaaatccttaaatgcttatgtttg 19065580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 106 - 437
Target Start/End: Complemental strand, 28772823 - 28772496
Alignment:
Q  106 ttgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatg 205  Q
    ||||||||||||||||||| |||||    ||||||||| |||||||| ||  ||||| |||||| ||||| |||||  ||||| |||||||  ||| |||    
T  28772823 ttgatagaagtatgataacgtgattgatgttgaactggagataatatatatgtgatggtagtatactaggaatgttgagtatgtatatgtgtcatgtatg 28772724  T
Q  206 aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    || ||||||||| ||||||||||||| ||||||  ||| |||| ||||| ||||| |||| || |||||||||| || |||| |||||| ||||||||||    
T  28772723 aacccttgaatgcttatgtttgattatacttta--attgtgaaatgtgaactaacccccagtgatcgtttggtttaccgccttccttatccgtatggatg 28772626  T
Q  306 ggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttag 405  Q
    ||||||||| | ||| ||||||||||||||||||||||||||||||||||  |||| |||||||||||||| || ||  ||||||| ||||||| ||||     
T  28772625 ggtagacggtgcgcaagaatagtttgctttgctttggtgagttgcttgaggatagcttggagctacctcgtctattg-ttttcggtatcttagacttta- 28772528  T
Q  406 ggctctgattaggggtcgttctttggtgttta 437  Q
    |||||| ||||||||||| |||||| ||||||    
T  28772527 ggctctaattaggggtcggtctttgatgttta 28772496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 267 - 484
Target Start/End: Original strand, 24533546 - 24533763
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaata-gtttgctttgctttggtgagttgcttgagattagcgtgg 365  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||  ||||  |||||||| |||||||||||| ||||||| |||| |||    
T  24533546 tggtcgtttggttgaccgcctaccttattcgtatggatgggtagacgacgtgcataaatatttttgctttactttggtgagtttcttgagaatagcttgg 24533645  T
Q  366 agctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttg 465  Q
    |||||||||||||||  ||||||| |||||||||  ||||||||||||||||||| |  |||||| | ||||||| ||||| | ||||||||||||| ||    
T  24533646 agctacctcgtttacaacatttcgatgtcttaga-cttagggctctgattaggggccagtctttgctatttacctatattaagactgttggagatttctg 24533744  T
Q  466 agaccatgtatttatgatg 484  Q
    |||| ||||||| ||||||    
T  24533745 agactatgtattgatgatg 24533763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 163 - 484
Target Start/End: Complemental strand, 21652244 - 21651927
Alignment:
Q  163 ttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactc 262  Q
    ||||||||||| | |||||  ||||| ||||||| |||| |  ||||||| |||| ||||||||||||  ||||||  |||||||  ||||| ||||| |    
T  21652244 ttagtattctaagaatgttaagtatgtatatgtgttatgcacaaatcctttaatgcttatgtttgattgtacttta--attatgagatgtgaactaaccc 21652147  T
Q  263 ccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcg 362  Q
     ||||||||||||||||||||| || |||||||| |||| || |||||||| |||| ||||  |||||||||| | |||||||||||||||||  ||||     
T  21652146 acattggtcgtttggttgactgtctgccttattcttatgaataggtagacgacgtgtaggagcagtttgctttac-ttggtgagttgcttgaggatagct 21652048  T
Q  363 tggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagattt 462  Q
    |||| ||||||||| |||||| ||| ||||||||||  | |||||||| || |||| |||  |||||||||||||||||||||||| || |||  |||||    
T  21652047 tggatctacctcgtctactgc-ttttggtgtcttagtctctagggctccgagtaggtgtcagtctttggtgtttacctttattatgactattgaggattt 21651949  T
Q  463 ttgagaccatgtatttatgatg 484  Q
    ||||||| ||||||| ||||||    
T  21651948 ttgagactatgtattgatgatg 21651927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 284 - 486
Target Start/End: Original strand, 30621690 - 30621889
Alignment:
Q  284 gcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactg 382  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  || | |||| ||||||||||||||||    
T  30621690 gcctaccttcttcgtatggatgggtagacggcgtgcatgactagtttgctttgctttggtgagttgcttgaggataacttggatgctacctcgtttactg 30621789  T
Q  383 catttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatga 482  Q
    | ||| ||||| ||||| ||||||||||| |||| ||||||    | | || ||| ||||||||||||||||||||||||||||||  ||||||| ||||    
T  30621790 c-ttttggtgttttagactttagggctcttattacgggtcg--gctagatg-ttatctttattatgtctgttggagatttttgagattatgtattgatga 30621885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 284 - 486
Target Start/End: Original strand, 30624311 - 30624510
Alignment:
Q  284 gcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactg 382  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||  || | |||| ||||||||||||||||    
T  30624311 gcctaccttcttcgtatggatgggtagacggcgtgcatgactagtttgctttgctttggtgagttgcttgaggataacttggatgctacctcgtttactg 30624410  T
Q  383 catttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatga 482  Q
    | ||| ||||| ||||| ||||||||||| |||| ||||||    | | || ||| ||||||||||||||||||||||||||||||  ||||||| ||||    
T  30624411 c-ttttggtgttttagactttagggctcttattacgggtcg--gctagatg-ttatctttattatgtctgttggagatttttgagattatgtattgatga 30624506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 464
Target Start/End: Original strand, 30667492 - 30667669
Alignment:
Q  285 cctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactgc 383  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| | ||||  || | | || |||||||||||||||||    
T  30667492 cctaccttattcgtatggatgggtagacggcgtgcatgactagtttgctttgctttggtgagtttcatgaggataacttagatgctacctcgtttactgc 30667591  T
Q  384 atttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagattttt 464  Q
     ||| ||||| ||||| |||| |||||| ||||  ||||| || ||| || ||| ||||||||||||||||||||||||||    
T  30667592 -ttttggtgttttagactttaaggctcttattacaggtcggtc-ttgatg-ttatctttattatgtctgttggagattttt 30667669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 267 - 424
Target Start/End: Complemental strand, 24301262 - 24301108
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga 366  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||    |||||||||||||||||  |||| ||||    
T  24301262 tggttgtttggttgaccgcctaccttattcgtatggatgggtagacggtgtgcatgaatagtttgctt--acttggtgagttgcttgaggatagc-tgga 24301166  T
Q  367 -gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgt 424  Q
     |||||||| |||||||  ||| ||||| ||||| ||||||||||||||||||||||||    
T  24301165 tgctacctcatttactg-gttttggtgttttagactttagggctctgattaggggtcgt 24301108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 239 - 486
Target Start/End: Original strand, 34898479 - 34898709
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    |||||||||  ||||| ||||| |||| |||||||||| |||| || || |||||||| |||| |||||||||||| |||||||| ||||||| ||||||    
T  34898479 taattatgagatgtgaactaacccccagtggtcgtttgattgattgtctgccttattcttatgaatgggtagacggtgtgcaggagtagtttgttttgct 34898578  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttac 438  Q
    ||||| |||||||||||| |||| | |||||||| ||| |||||| ||| ||||                |||||||||| |||| ||||||||||||||    
T  34898579 ttggtaagttgcttgagaatagcttagagctaccccgtctactgc-ttttggtg----------------tctgattaggtgtcggtctttggtgtttac 34898661  T
Q  439 ctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    |||||| ||| ||||||  ||||||| |||| ||||||| ||||||||    
T  34898662 ctttatcatgactgttgaggattttttagactatgtattgatgatgat 34898709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 428
Target Start/End: Complemental strand, 22575266 - 22575083
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| ||||| |||  |||||||||| |||||  ||| ||||||  |||||||||||||||||| | ||| |||||| ||    ||||    
T  22575266 taattgtgaattatgaactaacccccggtggtcgtttgattgaccaccttccttatcagtatggatgggtagacggtgggcaagaatagatt----tgct 22575171  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctt 428  Q
    |||||||||||||||||  |||| ||||||||||||||||| ||| ||| || |||||||| ||||||||||||||||||||||| ||||    
T  22575170 ttggtgagttgcttgaggatagcttggagctacctcgtttattgc-ttttggggtcttaga-tttagggctctgattaggggtcggtctt 22575083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 355
Target Start/End: Complemental strand, 20509576 - 20509489
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgag 355  Q
    ||||| ||| |||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||| |||||||||||||||||    
T  20509576 tggtcatttagttgaccgcctaccttattcgtatggatgggtagacggcgtgcatgagtag-ttgctttgcattggtgagttgcttgag 20509489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 353
Target Start/End: Complemental strand, 18994559 - 18994473
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag-tttgctttgctttggtgagttgcttg 353  Q
    |||||||||||||||| |||| |||||| || |||||||||||||||| ||||| |||||| |||||||  |||||||||||||||||    
T  18994559 tggtcgtttggttgaccgccttccttatccgaatggatgggtagacggtgtgcaagaatagatttgctta-ctttggtgagttgcttg 18994473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 28772935 - 28772864
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatga 82  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||||||||| ||| |||| | ||||||    
T  28772935 ttgttgatttgattaggctaaatgagaaataaggtgagtaattcttatattgatggatgttataagtgatga 28772864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 17739367 - 17739299
Alignment:
Q  273 tttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagt--ttgctttgctt 339  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| ||| ||||  |||||||||||    
T  17739367 tttggttgaccgcctaccttattcgtattgatgggtagacggcgtgctggagtagtagttgctttgctt 17739299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 24382180 - 24382107
Alignment:
Q  158 tgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgtttgatta 231  Q
    ||||| |||||||||||| |||||  ||||||||||||| |||| ||||||| ||||||| |||||||||||||    
T  24382180 tgatggtagtattctaggaatgttgagtatgcatatgtgttatgtatgaatcattgaatgcttatgtttgatta 24382107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 24382374 - 24382323
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  |||||||||| ||||||||||||| ||| |||||||||||||    
T  24382374 tgaattgtatttgttgagttgattaggctaaatgtggattaaggtgagtaat 24382323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 18533751 - 18533677
Alignment:
Q  158 tgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaatgtttatgtttgatta 231  Q
    ||||||||||||||||||   | | |||||| ||||||| |||| ||||| |||||||||| |||||||||||||    
T  18533751 tgatgttagtattctaggagggatgggtatgtatatgtgttatgcatgaaatccttgaatgcttatgtttgatta 18533677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 20271462 - 20271404
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatc 69  Q
    |||||||||||| || ||||||||| |||||||||||||||| |||  |||||| ||||    
T  20271462 ttgttgagttaagtatgctaaatgaagaataaggtgagtaatcctttcattgattgatc 20271404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 340
Target Start/End: Complemental strand, 27402009 - 27401933
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgcttt 340  Q
    |||| |||||||||||||||| |||| || |||| ||||| |||||||||| || ||||||| ||| ||||||||||||    
T  27402009 cccagtggtcgtttggttgaccgcctgcc-tatttgtatgaatgggtagacagcttgcaggattag-ttgctttgcttt 27401933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 29112350 - 29112309
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||| ||||||||||||||||||    
T  29112350 ttgttgagttaagtatgctaaattaggaataaggtgagtaat 29112309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 227
Target Start/End: Original strand, 45620211 - 45620272
Alignment:
Q  167 tattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaatgtttatgtttg 227  Q
    ||||||||| |||||| ||||| ||||||| |||| ||||| |||||||||| |||||||||    
T  45620211 tattctaggaatgtttagtatgtatatgtgttatgcatgaaatccttgaatgcttatgtttg 45620272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 24839792 - 24839708
Alignment:
Q  142 ggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgttt 226  Q
    |||||||||| |||  ||||||||||||||| || | | | |||||  |||||| ||||| ||||||||||||||| || |||||    
T  24839792 ggggataataattatgtgatgttagtattctgggaaggatgggtatttatatgtaatatgtatgaatccttgaatgcttgtgttt 24839708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 101 - 429
Target Start/End: Original strand, 3295072 - 3295394
Alignment:
Q  101 gtatcttgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatat 200  Q
    ||||||||||||| |||||||| | |||| || || ||| | |||||||||||||| |||||||||||||||||| |||||  ||||| ||||||| |||    
T  3295072 gtatcttgatagatgtatgatagcctgatctgtatcgaattagggataatatttaggtgatgttagtattctaggaatgttgagtatgtatatgtgttat 3295171  T
Q  201 gaatg-aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgta 299  Q
    | ||| |||| ||||||| |||||||||||||   | | ||||| |||||||||  ||||| |||| |||| ||||||||||| ||||  ||||| ||||    
T  3295172 gcatgaaatctttgaatgcttatgtttgatta---tgtttaattgtgaattgtggactaacccccaatggttgtttggttgaccgcctttcttatccgta 3295268  T
Q  300 tggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttaga 399  Q
    ||||| ||||   || ||||| ||||| ||||||||||||||||| ||||||||||  |||| |||||||||||| |||||||  ||| |||||||||||    
T  3295269 tggataggta---ggtgtgcatgaataatttgctttgctttggtgtgttgcttgaggatagcttggagctacctcatttactg-tttttggtgtcttaga 3295364  T
Q  400 ttttagggctctgattaggggtcgttcttt 429  Q
     ||||||||||||||||||||||| |||||    
T  3295365 ctttagggctctgattaggggtcgatcttt 3295394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 107 - 486
Target Start/End: Original strand, 11834444 - 11834820
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    ||||||||||||||||||||||||    |||||||||||||||||  ||  ||||  |||||||||||| |||||   ||||| |||||| || | ||||    
T  11834444 tgatagaagtatgataacatgattgatgttgaactggggataataaatatgtgattgtagtattctaggaatgttgaatatgcgtatgtgttaagcatga 11834543  T
Q  207 a-tccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    | | |||||||| |||||||||||||   | | |||||||||||||||  ||||| || | |||||||||||||||| |||| |||||| |  |||||||    
T  11834544 aatacttgaatgcttatgtttgatta---tgtttaattatgaattgtgtactaaccccaactggtcgtttggttgaccgccttccttat-ctaatggatg 11834639  T
Q  306 ggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttag 405  Q
    ||||||| | ||||||||||| |||||||||||||| |||||||||||||  |||| ||||||||||||||||| |   ||| |||||||||| ||||||    
T  11834640 ggtagacagtgtgcaggaataatttgctttgctttgatgagttgcttgaggatagcttggagctacctcgttta-tcacttttggtgtcttag-ttttag 11834737  T
Q  406 ggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggag--atttttgagaccatgtatttatgatgat 486  Q
     ||||||||||||||||| |||||  ||| || ||||| | ||||| ||||||   |||||||||| ||||||| ||||||||    
T  11834738 agctctgattaggggtcggtctttaatgtctatctttactttgtctattggagttttttttgagactatgtattgatgatgat 11834820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 239 - 486
Target Start/End: Complemental strand, 10932886 - 10932641
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||||| ||||||| |||| ||||| |||||||||  |||||||||||||| ||||||||||||||| |||| |||| ||||||||||||||    
T  10932886 taattgtgaattgtaagctaac-cccagtggtcatttggttgaacgcctaccttattcgcatggatgggtagacgacgtggaggactagtttgctttgct 10932788  T
Q  339 ttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgttta 437  Q
    ||||||||| |||||||  |||| ||||  |||||||||||||||| ||| || |||||||| ||||| ||| ||||||||||||  |||||| || |||    
T  10932787 ttggtgagtcgcttgaggatagcttggacactacctcgtttactgc-ttttggggtcttagactttagagctttgattaggggtctgtctttgatg-tta 10932690  T
Q  438 cctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
     ||||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  10932689 tctttattatgtctgttggaaatttttgagactatgtattaatgatgat 10932641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 256 - 486
Target Start/End: Complemental strand, 21662822 - 21662592
Alignment:
Q  256 ctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgag 355  Q
    |||||||||| ||||||||||||| || | || |||||||| || | |||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  21662822 ctaactcccagtggtcgtttggttaaccgtctgccttattcttacgaatgggtagacggtgtgcatgaatagtttgttttgctttggtgagttgcttgag 21662723  T
Q  356 attagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgtt 454  Q
      | || |||| |||||||||| ||||| |||| |||||| |||  ||||||||||| |||||| || | |||||||||||||||||||||||| |||||    
T  21662722 gat-gcatggatgctacctcgtctactgtattttggtgtcatagcctttagggctctaattaggtgtgggtctttggtgtttacctttattatgactgtt 21662624  T
Q  455 ggagatttttgagaccatgtatttatgatgat 486  Q
    |  || |||  |||| ||||||||||||||||    
T  21662623 gatgagtttcaagactatgtatttatgatgat 21662592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 313 - 484
Target Start/End: Original strand, 10832774 - 10832946
Alignment:
Q  313 ggcgtgcaggaatagttt-gctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctct 411  Q
    |||||||| ||||||||| ||||||||| |||||||| ||||||  |||| ||||||| |||| |||||||||||||| |||||||||  ||||||||||    
T  10832774 ggcgtgcatgaatagttttgctttgcttcggtgagtttcttgaggatagcttggagcttcctcatttactgcatttcgatgtcttaga-cttagggctct 10832872  T
Q  412 gatta-ggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatgatg 484  Q
    ||||| ||||||| |||||| ||| ||||| ||| ||| |||||| ||||||||||||| ||||||| ||||||    
T  10832873 gattagggggtcggtctttgttgtctacctatatcatgactgttgaagatttttgagactatgtattgatgatg 10832946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 107 - 486
Target Start/End: Complemental strand, 27049796 - 27049421
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    |||||||||| ||||||||||||  | || |||  ||||||| |||| |  ||  |||||||||||||  |||||  ||||| |||| || |||| ||||    
T  27049796 tgatagaagtgtgataacatgatgcgtatggaatgggggatattattcatgtggagttagtattctagaaatgttgagtatgtatatttgttatgcatga 27049697  T
Q  207 at-ccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    || |||| || | ||||||||||||| ||||||  |||||||  | ||| ||| | | || |||||||||||||||| ||||||||||||| |||||||     
T  27049696 attccttaaacgcttatgtttgattatacttta--attatgagatatgaactacc-ctcaatggtcgtttggttgaccgcctaccttattcttatggatc 27049600  T
Q  306 ggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagatttta 404  Q
    |||| ||| ||||||||| ||| | ||||||| |||||||||| ||||||  |||| |||| ||||||||||||| ||  ||| ||| || |||  | ||    
T  27049599 ggtaaacgacgtgcaggactag-tcgctttgc-ttggtgagtttcttgaggatagcttggatgctacctcgtttattg-tttttggtatcgtagtctcta 27049503  T
Q  405 gggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    |||||||||||||| |||| |||| ||| |||| |||||||||| ||||||   |||||||||||  |||||| ||||||||    
T  27049502 gggctctgattaggtgtcggtcttgggtctttatctttattatgactgttgagtatttttgagactttgtattgatgatgat 27049421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 240 - 376
Target Start/End: Complemental strand, 12793762 - 12793626
Alignment:
Q  240 aattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctt 339  Q
    ||||||||||||||  ||||| || | |||||||||||||||| |||||| ||||||||||||||||||||||| |||||| |||||||||| || || |    
T  12793762 aattatgaattgtggactaacccctaatggtcgtttggttgaccgcctactttattcgtatggatgggtagacgacgtgcaagaatagtttgtttagc-t 12793664  T
Q  340 tggtgagttgcttgagattagc-gtggagctacctcgt 376  Q
    |||||||||||| ||| |||||  ||||||||||||||    
T  12793663 tggtgagttgctggaggttagctttggagctacctcgt 12793626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 113 - 329
Target Start/End: Complemental strand, 8022288 - 8022075
Alignment:
Q  113 aagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaatcctt 212  Q
    |||| |||||||||||| || ||  ||  |||||||||||| |  ||| |||||||||||||| ||||| |||||| ||||  |||||| ||||||||||    
T  8022288 aagtgtgataacatgatgtgtatgaaatgggggataatattcatgtgaagttagtattctaggaatgttgggtatgtatattcgatatgcatgaatcctt 8022189  T
Q  213 gaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagac 312  Q
    ||||| |||||||||||||   | | ||||| |||| | ||| ||||| || | | ||| |||||||||| || | |||||| |||||||||||||||||    
T  8022188 gaatggttatgtttgatta---tgtttaattgtgaaatatgaactaaccccaagtagtcatttggttgaccgcattccttatccgtatggatgggtagac 8022092  T
Q  313 ggcgtgcaggaatagtt 329  Q
    | |||||| || |||||    
T  8022091 gacgtgcaagattagtt 8022075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 451
Target Start/End: Complemental strand, 10724775 - 10724573
Alignment:
Q  247 aattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgag 346  Q
    |||||||| ||||| |||| |||| ||||||||||| ||||||||||||| |||| ||| || || |||||||| || ||||  ||||||||| ||||||    
T  10724775 aattgtgaactaac-cccagtggtagtttggttgaccgcctaccttattcttatgaatgtgtggatggcgtgcatgactagtc-gctttgctt-ggtgag 10724679  T
Q  347 ttgcttgagattagcgtggag-ctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttgg-tgtttacctttat 444  Q
    || ||  ||  |||| ||||  |||||||||||||||| ||| |  |||||||  | ||||||||||||||||||||| ||||||| |||||||||||||    
T  10724678 tttctctaggatagcttggattctacctcgtttactgcttttaga-gtcttagtctctagggctctgattaggggtcggtctttggatgtttacctttat 10724580  T
Q  445 tatgtct 451  Q
    | |||||    
T  10724579 tttgtct 10724573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 231
Target Start/End: Original strand, 25487541 - 25487655
Alignment:
Q  118 tgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaat 216  Q
    |||||| |||||||| |||||| ||  ||||||||| |  ||||||||||||| ||||| || |   |||| |||||||||||||||||| |||||||||    
T  25487541 tgataatatgatttggattgaattgaagataatattcatgtgatgttagtattgtaggggtgatgaatatgtatatgtgatatgaatgaaatccttgaat 25487640  T
Q  217 gtttatgtttgatta 231  Q
    |||||||||||||||    
T  25487641 gtttatgtttgatta 25487655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 25688988 - 25689066
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgt 317  Q
    ||||| ||||||  || ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  25688988 taattgtgaattacgaactaacccccagtggtcgtttggttgactgcttaccttattcatatggatgggtagacggcgt 25689066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 326
Target Start/End: Original strand, 8853968 - 8854027
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaata 326  Q
    |||||||||||||||| ||||||||||||| |||| || |||||||||||||||||||||    
T  8853968 tggtcgtttggttgaccgcctaccttattcttatgaattggtagacggcgtgcaggaata 8854027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24901485 - 24901548
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||||||  ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  24901485 tgaattgtatttgttgagttaattatgctaaatgaggaatgaggtgagtaactcttatattgat 24901548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 25661200 - 25661274
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    ||||| ||||||  || ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25661200 taattgtgaattacgaactaacccccagtggtcgtttggttgactgcttaccttattcatatggatgggtagacg 25661274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 25667605 - 25667679
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    ||||| ||||||  || ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25667605 taattgtgaattacgaactaacccccagtggtcgtttggttgactgcttaccttattcatatggatgggtagacg 25667679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 25674010 - 25674084
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    ||||| ||||||  || ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25674010 taattgtgaattacgaactaacccccagtggtcgtttggttgactgcttaccttattcatatggatgggtagacg 25674084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 239 - 313
Target Start/End: Original strand, 25680684 - 25680758
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    ||||| ||||||  || ||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  25680684 taattgtgaattacgaactaacccccagtggtcgtttggttgactgcttaccttattcatatggatgggtagacg 25680758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 311
Target Start/End: Complemental strand, 6808659 - 6808615
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtaga 311  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  6808659 tggtcgtttggttgactgcctaccttattcgtatgaatgggtaga 6808615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 4655681 - 4655633
Alignment:
Q  12 tgttgagttaattaggctaaatgaggaataaggtgagtaattcttatat 60  Q
    ||||||||||| || | ||||||||||||||||||||||||||||||||    
T  4655681 tgttgagttaactatgttaaatgaggaataaggtgagtaattcttatat 4655633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 327
Target Start/End: Original strand, 15046913 - 15046999
Alignment:
Q  242 ttatgaattgtgagctaactcccattggtcgt--ttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag 327  Q
    ||||||||||||| ||||| || | |||||||  ||||||||| |||||||| |||| |||| |||||||||||||||| ||||||||    
T  15046913 ttatgaattgtgaactaac-cctagtggtcgtgtttggttgaccgcctacctgattcttatgaatgggtagacggcgtgtaggaatag 15046999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 20419348 - 20419284
Alignment:
Q  1 tgaattgtgattgttgag-ttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||||||  |||||||| |||||||||||||||| |||||||| ||||||| ||||||||||||    
T  20419348 tgaattgtatttgttgagattaattaggctaaatggggaataagatgagtaactcttatattgat 20419284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 3294975 - 3295018
Alignment:
Q  22 attaggctaaatgaggaataaggtgagtaattcttatattgata 65  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  3294975 attaggctaaatgaggaataaggtgaataattcttatatcgata 3295018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 15855638 - 15855592
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  15855638 tggtcgtttggttgaccgcctacgttattcttatggatgggtagacg 15855592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 19633658 - 19633731
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagac 312  Q
    |||||||||||||| | ||||| |||| ||||||||||||||||  ||| |||||||| |||| ||| ||||||    
T  19633658 taattatgaattgttatctaacccccagtggtcgtttggttgaccacctgccttattcttatgaatgagtagac 19633731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 316
Target Start/End: Original strand, 38278469 - 38278518
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcg 316  Q
    |||| |||||||| |  |||||||||||||||||||||||||||||||||    
T  38278469 tggttgtttggtttaacgcctaccttattcgtatggatgggtagacggcg 38278518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 267 - 331
Target Start/End: Original strand, 24901758 - 24901821
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttg 331  Q
    |||||||| ||||||| |||||||| ||| ||||| ||||||||||| |||||| ||||||||||    
T  24901758 tggtcgttcggttgaccgcctacct-atttgtatgaatgggtagacgacgtgcatgaatagtttg 24901821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 5230168 - 5230219
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  |||||||||||| || | ||||||||||||||||||||||||    
T  5230168 tgaattgtacttgttgagttaagtatgttaaatgaggaataaggtgagtaat 5230219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 8602862 - 8602788
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatgagttt 86  Q
    |||||||||||| || ||||||||| |||||||||||||||| ||| | ||||| | | | |||||||||||||||    
T  8602862 ttgttgagttaagtatgctaaatgaagaataaggtgagtaatcctt-tcttgattgttttgatgaatgatgagttt 8602788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11834319 - 11834378
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatat 60  Q
    ||||||||  |||||||||||| || |||||||||| |||  ||||||||||||||||||    
T  11834319 tgaattgtatttgttgagttaactatgctaaatgagaaatctggtgagtaattcttatat 11834378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38377867 - 38377918
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  |||||||||||| || | ||||||||||||||||||||||||    
T  38377867 tgaattgtacttgttgagttaagtatgttaaatgaggaataaggtgagtaat 38377918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 17216481 - 17216436
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagac 312  Q
    |||||||||  ||||| ||||||||||||||||||||| |||||||    
T  17216481 tggtcgtttaattgaccgcctaccttattcgtatggataggtagac 17216436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 25105937 - 25105978
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||| ||||||||||||||||||    
T  25105937 ttgttgagttaagtatgctaaattaggaataaggtgagtaat 25105978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 17760695 - 17760752
Alignment:
Q  292 tattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttg 353  Q
    |||| ||||| ||||||||||||||||||||| ||||||| |    ||||||||||||||||    
T  17760695 tatttgtatgaatgggtagacggcgtgcaggattagtttgtt----tttggtgagttgcttg 17760752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 19062015 - 19062072
Alignment:
Q  292 tattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttg 353  Q
    |||| ||||| ||||||||||||||||||||| ||||||| |    ||||||||||||||||    
T  19062015 tatttgtatgaatgggtagacggcgtgcaggattagtttgtt----tttggtgagttgcttg 19062072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 239 - 484
Target Start/End: Complemental strand, 11774644 - 11774401
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag-tttgctttgc 337  Q
    |||||||||||| ||| ||||| |||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||| |||| |    
T  11774644 taattatgaattatgaactaacccccagtggttgtttggttggccgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttttcttttc 11774545  T
Q  338 tttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgttta 437  Q
    |||||||| || ||||||  |||| | ||||||||| || |||||||||||| |||||||||    | |||||||||||||||||| ||||| |||| ||    
T  11774544 tttggtgacttacttgaggatagcttagagctaccttgtctactgcatttcgatgtcttaga---caaggctctgattaggggtcggtctttagtgtcta 11774448  T
Q  438 cctttattatgtctgttggagatttttgagaccatgtatttatgatg 484  Q
    ||| |||||||  ||||||||||||||||||| ||||||| ||||||    
T  11774447 cctatattatgagtgttggagatttttgagactatgtattgatgatg 11774401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 107 - 287
Target Start/End: Original strand, 20597674 - 20597852
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    ||||||||||||||||||||||||    |||||||||||||||||| ||  ||||| |||||||||||| ||||   ||||| ||||||| |||| ||||    
T  20597674 tgatagaagtatgataacatgattgatgttgaactggggataatatatatgtgatggtagtattctaggaatgtagagtatgtatatgtgttatgcatga 20597773  T
Q  207 atccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcct 287  Q
    ||||||||||| ||||| ||||||| |  |  | ||| |||||||||  ||||| |||| |||||||||||||||||||||    
T  20597774 atccttgaatgattatgcttgattata--tcttgattgtgaattgtggactaacccccagtggtcgtttggttgactgcct 20597852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 6407496 - 6407381
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| ||||| | || ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| || |||||| ||||||     
T  6407496 taattgtgaattatgaactaaccctcagtggtcgtttagttgacttcctaccttattcgtatggatgggtagacggcgtgcaagagtagttt-ctttgca 6407398  T
Q  339 ttggtgagttgcttgag 355  Q
    |||||||||||||||||    
T  6407397 ttggtgagttgcttgag 6407381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 241 - 486
Target Start/End: Complemental strand, 21958102 - 21957854
Alignment:
Q  241 attatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag-----tttgcttt 335  Q
    |||||||||||||  ||||| || |  ||| ||||||||||| |||| |||||| ||||||||| ||||||||| |||||  |||||     ||||||||    
T  21958102 attatgaattgtggactaaccccaagcggttgtttggttgaccgccttccttatccgtatggattggtagacggtgtgcatcaatagttttctttgcttt 21958003  T
Q  336 gctttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgt 434  Q
    |||| |||||||||||||||  || | |||| |||||||||||||  || |||  ||||||||||  ||||||||| ||||| || ||| |||||| ||     
T  21958002 gcttgggtgagttgcttgaggataacttggatgctacctcgtttatcgc-ttttagtgtcttaga-cttagggctccgattaaggttcggtctttgttg- 21957906  T
Q  435 ttacctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    ||||||||||||||| ||||||||||||||||||| | ||| | ||||||||    
T  21957905 ttacctttattatgtatgttggagatttttgagactaagtactgatgatgat 21957854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 248 - 349
Target Start/End: Complemental strand, 5889633 - 5889532
Alignment:
Q  248 attgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagt 347  Q
    ||||||| ||||| || | |||||||||||||||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||   |||||||||    
T  5889633 attgtgaactaacccctaatggtcgtttggttgaccgcctaccttattcttatgaatgggtagacggcgtgcatgaatagtttgctttagcttggtgagt 5889534  T
Q  348 tg 349  Q
    ||    
T  5889533 tg 5889532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 104
Target Start/End: Original strand, 19855318 - 19855413
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatgag--tttgatgatgatttcaagtat 104  Q
    |||||||||| ||||||||||||||| ||| ||||||||||||||||||||||| ||| | || |||||||||  |||||||||||||| ||||||    
T  19855318 ttgttgagttgattaggctaaatgagaaatgaggtgagtaattcttatattgatggatgtaattaatgatgagtttttgatgatgatttaaagtat 19855413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 9197439 - 9197348
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagttt 330  Q
    ||||| |||| ||||| ||||| |||| ||||||||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||||    
T  9197439 taattgtgaaatgtgaactaacccccaatggtcgtttggttgactacctaccttattcgtatggatgcgtagacggtgtgcaagagtagttt 9197348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 351
Target Start/End: Original strand, 12452672 - 12452842
Alignment:
Q  185 tatgcatatgtgatatgaatgaa-tccttgaatgtttatgtttgattagact---ttataattatgaattgtgagctaactcccattggtcgtttggttg 280  Q
    |||| ||||||| |||| ||||| |||||||||  |||||||||||| || |   ||||||||||||| ||||| ||||| || | ||||| ||| ||||    
T  12452672 tatgtatatgtgttatgcatgaaatccttgaattcttatgtttgatt-gattatattataattatgaaatgtgaactaacccctagtggtcattttgttg 12452770  T
Q  281 actgcctaccttattcgtatggatgggtagacggcgtgcaggaatagt--ttgctttgctttggtgagttgct 351  Q
    |||||||||||||||||||| ||||||||||| |||| ||  | ||||  ||||||||| |||||||||||||    
T  12452771 actgcctaccttattcgtatagatgggtagactgcgtacaaaagtagttgttgctttgc-ttggtgagttgct 12452842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 351
Target Start/End: Complemental strand, 19076227 - 19076084
Alignment:
Q  206 aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    |||||||||||| ||||||||||||| ||||||  ||| |||| ||||| ||||| | || ||||||||||||||||  ||| |||||||| |||| |||    
T  19076227 aatccttgaatgcttatgtttgattatacttta--attgtgaaatgtgaactaac-ctcagtggtcgtttggttgacctcctgccttattcttatgaatg 19076131  T
Q  306 ggtagacggcgtgcaggaatagt--ttgctttgctttggtgagttgct 351  Q
    | ||||||| ||||| || ||||  |||||||||||| ||||||||||    
T  19076130 gatagacggtgtgcatgagtagttattgctttgcttt-gtgagttgct 19076084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 239 - 339
Target Start/End: Complemental strand, 17957395 - 17957296
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    |||||||| | ||||| ||||| |||| |||||||||||||||| |||||||||||| ||||||||| ||| ||| |||||| || ||| ||||||||||    
T  17957395 taattatggaatgtgaactaacccccaatggtcgtttggttgaccgcctaccttatttgtatggatgagtatacgacgtgcaagagtag-ttgctttgct 17957297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 335
Target Start/End: Original strand, 19855455 - 19855660
Alignment:
Q  129 tttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaatgtttatgtttg 227  Q
    ||||||||||| ||  ||||||||| | |||  |||||||||||| | |||||  ||||| ||||||| ||||  |||| || ||||||| |||||||||    
T  19855455 tttgcattgaattgaagataatattcatctggagttagtattctaagaatgttgagtatgtatatgtgttatgcttgaaatctttgaatgcttatgtttg 19855554  T
Q  228 attagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag 327  Q
    |||| ||||||  ||| |  | ||||| ||||| |||| |  |||||||||| |||| |||||||||||| |||||||| ||||| | ||||| || |||    
T  19855555 attatacttta--attgtagaatgtgaactaacccccagtcatcgtttggttaactgtctaccttattcgcatggatggatagacagtgtgcatgagtag 19855652  T
Q  328 tttgcttt 335  Q
    ||| ||||    
T  19855653 ttttcttt 19855660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 485
Target Start/End: Original strand, 14615831 - 14615951
Alignment:
Q  363 tggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagattt 462  Q
    ||||||||||||||||| ||  ||| |  ||||||||||| ||| |||||||||||||||| |||| |  ||||| | |||||||||| |||| | ||||    
T  14615831 tggagctacctcgtttattgttttt-gacgtcttagattt-aggactctgattaggggtcggtcttcgacgtttatcattattatgtcagttgaatattt 14615928  T
Q  463 ttgagaccatgtatttatgatga 485  Q
    ||||||| ||||||| |||||||    
T  14615929 ttgagactatgtattgatgatga 14615951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 20597549 - 20597647
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaa-tgatg-agtttgatgatgattt 97  Q
    ||||||||  ||||||||||||||| |||||||||||| | ||||||||| ||||||||||| | ||| |||| || ||||| | ||||||||||||||    
T  20597549 tgaattgtatttgttgagttaattatgctaaatgaggagtgaggtgagtagttcttatattgtttgatgttattaagtgatgaattttgatgatgattt 20597647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 12452483 - 12452554
Alignment:
Q  14 ttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatgagttt 86  Q
    ||||||| ||| |||||| || |||||||||||||||||||||| |||||||||| |||| |||||| |||||    
T  12452483 ttgagttgattcggctaa-tggggaataaggtgagtaattcttacattgatagatgttataaatgattagttt 12452554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 31933626 - 31933562
Alignment:
Q  256 ctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgca 320  Q
    ||||| |||| | |||||||| ||||| |||||||||||||||||||||| ||||||| ||||||    
T  31933626 ctaacccccaatcgtcgtttgattgaccgcctaccttattcgtatggatgagtagacgacgtgca 31933562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 9650441 - 9650390
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  |||||||||| |||||||||||||| ||||||||| ||||||    
T  9650441 tgaattgtatttgttgagttgattaggctaaatgaagaataaggtcagtaat 9650390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 9219901 - 9219852
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtaga 311  Q
    |||| ||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  9219901 cccagtggtcatttggttgactacctaccttatttgtatggatgagtaga 9219852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 17377837 - 17377882
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattctt 56  Q
    |||||||||||  || ||||||||| ||||||||||||||||||||    
T  17377837 ttgttgagttatgtatgctaaatgaagaataaggtgagtaattctt 17377882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 5373017 - 5373070
Alignment:
Q  297 gtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttga 354  Q
    ||||| |||||||||||||||||| || |||||||||    |||||||||||||||||    
T  5373017 gtatgaatgggtagacggcgtgcatgactagtttgct----tttggtgagttgcttga 5373070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 107 - 379
Target Start/End: Complemental strand, 23638279 - 23638010
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    |||||||| | ||||| |||||| |  || ||| ||||||||||||| |   ||| ||||||||||||| |||||  ||||| |||||||||||| ||||    
T  23638279 tgatagaattttgatagcatgatgtatatggaattggggataatattcatgagatattagtattctaggaatgttgagtatgtatatgtgatatgcatga 23638180  T
Q  207 atccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgg 306  Q
    ||||||||||| ||||||||||||| ||||  |||||||||| ||||  ||||| || | || ||||||||||||| |||| ||||||||||||||||||    
T  23638179 atccttgaatgcttatgtttgattatactt--taattatgaactgtggactaacccctagtgctcgtttggttgaccgccttccttattcgtatggatgg 23638082  T
Q  307 gtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgttta 379  Q
    |||||||| ||||| |||||| |||| |||||||||||||||| |||||| |||| |||||||||||| ||||    
T  23638081 gtagacggtgtgcatgaatagattgc-ttgctttggtgagttgtttgagaatagcttggagctacctcattta 23638010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 107 - 485
Target Start/End: Complemental strand, 24382653 - 24382273
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    |||||||| |||||||||||||||    |||||||||||||||||| ||  ||||| ||||||||| |  |||||  ||||| |||| ||||||| ||||    
T  24382653 tgatagaaatatgataacatgattgattttgaactggggataatatatatgtgatggtagtattcttgaaatgttgagtatgtatatatgatatgcatga 24382554  T
Q  207 a-tccttgaatgtttatgtttgatta-gactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggat 304  Q
    | | |||||||| ||||||||||||| | ||| ||   | |||||| ||| ||||| |||| |||||||||||||||| |||| |  |||  ||||||||    
T  24382553 aatacttgaatgcttatgtttgattatgtcttgat---tgtgaattatgaactaacccccagtggtcgtttggttgaccgccttctctatcagtatggat 24382457  T
Q  305 gggtagacggcgtgcaggaatag----tttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttaga 399  Q
    ||||||||||||||||| | |||    |||| ||||||||||||||||||| |||  |||| | || ||||||||||||| |   ||| ||||||||| |    
T  24382456 gggtagacggcgtgcagaactagttgctttgttttgctttggtgagttgctggaggatagcttcgatgctacctcgttta-tcatttttggtgtcttata 24382358  T
Q  400 ttttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatgatga 485  Q
     |||||||||||||||||| |||  |||||| || ||| ||||||||||||| ||| |||||||||| || ||||||| |||||||    
T  24382357 atttagggctctgattaggagtcagtctttgttg-ttatctttattatgtctattgaagatttttgaaactatgtattaatgatga 24382273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 335 - 486
Target Start/End: Original strand, 24554867 - 24555018
Alignment:
Q  335 tgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgt 434  Q
    |||||| ||||||||||||||  |||| || |||||||||||||||||||||| ||||||||||  |||||||||||||||| |||||| |||||| |||    
T  24554867 tgcttttgtgagttgcttgaggatagcttgaagctacctcgtttactgcattttggtgtcttagtctttagggctctgattatgggtcggtctttgatgt 24554966  T
Q  435 ttacctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    |||||| |||||||  ||||||||||||||||||| ||||||| ||||||||    
T  24554967 ttacctatattatgattgttggagatttttgagactatgtattgatgatgat 24555018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 107 - 379
Target Start/End: Complemental strand, 18822790 - 18822519
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    |||||||||| |||||||||||| || || |||  | |||||||||| |  ||  |||||| ||||||| |||||||||||| |||| |  |||| ||||    
T  18822790 tgatagaagtgtgataacatgatgtgtatggaatggaggataatattcatgtggagttagttttctaggaatgtttggtatgtatattttctatgcatga 18822691  T
Q  207 atccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgg 306  Q
    ||||||||||| |||||||||||||  |||||  | | |||  ||||| ||||| | || || || ||||||| || |||| ||||||  ||||||||||    
T  18822690 atccttgaatgattatgtttgattatgcttta--actgtgagatgtgaactaaccctcagtgatcctttggtttaccgccttccttatctgtatggatgg 18822593  T
Q  307 gtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgttta 379  Q
    |||||||  ||||| ||||| ||||||||||||||||||||||||| ||  |||| |||| |||||||||||||    
T  18822592 gtagacgatgtgcatgaatattttgctttgctttggtgagttgcttcaggatagcttggatgctacctcgttta 18822519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 107 - 340
Target Start/End: Complemental strand, 24622739 - 24622508
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatg- 205  Q
    |||||||||||||||||| |||||    | |||||||||||||||| ||  ||||| |||||||||||| |||||  ||||| ||||||  |||| |||     
T  24622739 tgatagaagtatgataacctgattaatgtcgaactggggataatatatatgtgatggtagtattctaggaatgttgagtatgtatatgtactatgcatgc 24622640  T
Q  206 aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    ||||||||||||||||||||||||||  |||||  |||||||  ||||| ||||| || | |||||||| |||| || |||| ||||||  ||| |||||    
T  24622639 aatccttgaatgtttatgtttgattatgcttta--attatgagatgtga-ctaacccctagtggtcgttcggttcaccgccttccttatctgtacggatg 24622543  T
Q  306 ggtagacggcgtgcaggaatagtttgctttgcttt 340  Q
    ||||||| | ||||||||||| |||| ||||||||    
T  24622542 ggtagacagtgtgcaggaataatttgttttgcttt 24622508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 190 - 485
Target Start/End: Original strand, 17624920 - 17625218
Alignment:
Q  190 atatgtgatatgaatgaa-tccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgccta 288  Q
    ||||||| |||| ||||| | ||||||| ||||||||||||||   | | ||||| |||||| ||| |||||  ||| |||||||||||||||  ||||     
T  17624920 atatgtgctatgcatgaaattcttgaatttttatgtttgatta---tgtttaattgtgaattatgaactaaccaccagtggtcgtttggttgaacgcctt 17625016  T
Q  289 -ccttattcgtatggatgggtagacggcgtgcaggaatagtt----tgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactg 382  Q
     |||||| ||||||||||||||||||| |||||| |||||||    || ||||||||| |||||||||||||  |||| |||| || ||||||||||  |    
T  17625017 tccttatccgtatggatgggtagacggtgtgcagaaatagttgctttgttttgctttgctgagttgcttgaggatagcttggatgcaacctcgtttatcg 17625116  T
Q  383 catttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatga 482  Q
     |||| |||||||||||  |||| ||| | ||||||||||  |||| | ||||||  ||| || ||||| ||||||||||||||||| |||| || ||||    
T  17625117 -attttggtgtcttagacattagagctttaattaggggtcagtcttcgttgtttatttttgttttgtctattggagatttttgagactatgtcttgatga 17625215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 206 - 331
Target Start/End: Original strand, 24551835 - 24551957
Alignment:
Q  206 aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    |||||||||||| ||||||||||||| |||| ||   |||||||||||| ||||| | || |||||||||||||||| |||||||||| |||||||||||    
T  24551835 aatccttgaatgcttatgtttgattatacttgat---tatgaattgtgaactaaccctcagtggtcgtttggttgaccgcctaccttaatcgtatggatg 24551931  T
Q  306 ggtagacggcgtgcaggaatagtttg 331  Q
    |||||| || ||||| ||||||||||    
T  24551932 ggtagatggtgtgcaagaatagtttg 24551957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 329
Target Start/End: Complemental strand, 23539324 - 23539159
Alignment:
Q  163 ttagtattctagggatgtttggtatgcatatgtgatatgaatg-aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaact 261  Q
    ||||||||||||| |||||  ||||| ||||||| |||| ||| |||||||||||||||||||||||||| ||||||  ||| || | ||| | |||||     
T  23539324 ttagtattctaggaatgttgagtatgtatatgtgttatgcatgtaatccttgaatgtttatgtttgattatacttta--attgtggaatgttatctaacc 23539227  T
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    || | ||| | ||||||||||  ||||||||||||||||||| |||| |||| |||||| || |||||    
T  23539226 cctagtggccttttggttgaccacctaccttattcgtatggacgggtcgacgacgtgcatgattagtt 23539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 477
Target Start/End: Complemental strand, 25280469 - 25280261
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga 366  Q
    ||||||||||||||||||| |||| ||||| |||| ||||||||||| |||||| || |||| | |||||| ||||||||||||| |||| || | ||||    
T  25280469 tggtcgtttggttgactgcataccatattcttatgaatgggtagacgacgtgcatgactagtct-ctttgc-ttggtgagttgctggagaataacttgga 25280372  T
Q  367 -gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttgg-tgtttacctttattatgtctgttggagattttt 464  Q
     | || |||||||| ||| ||| |||||| |||  | ||||||| ||||||||||||  ||||||| |||||||||||||| | |||||| |||  ||||    
T  25280371 tgttatctcgtttattgc-ttttggtgtcgtagtctctagggctttgattaggggtcagtctttggatgtttacctttattttatctgtt-gaggatttt 25280274  T
Q  465 gagaccatgtatt 477  Q
    ||||| |||||||    
T  25280273 gagactatgtatt 25280261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 16227958 - 16227885
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttg 341  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| || |||||| ||||||||||    
T  16227958 tggtcgtttggttgaccgcctaccttattcatatggatgggtagacggcgtgcatgattagttt-ctttgctttg 16227885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 267 - 383
Target Start/End: Complemental strand, 22883438 - 22883323
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga 366  Q
    ||||| |||||||||| | ||||| |||||| ||||||||||||||| ||||||||| ||| ||||||||| |||||||||||||| ||   |||  |||    
T  22883438 tggtcatttggttgaccgtctaccatattcgcatggatgggtagacgacgtgcaggagtag-ttgctttgcattggtgagttgcttaaggaaagctggga 22883340  T
Q  367 gctacctcgtttactgc 383  Q
    ||| |||||||||||||    
T  22883339 gcttcctcgtttactgc 22883323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 17624719 - 17624779
Alignment:
Q  2 gaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattg 62  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  17624719 gaattgtatttgttgagttgattaggctaaatgaggaataaggtgagtaatccttatattg 17624779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 24382777 - 24382710
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagat 68  Q
    ||||||||  ||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||    
T  24382777 tgaattgtatttgttgagttaattatgctaaatgatgaataaggtgagaaattcttatattgattgat 24382710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 383
Target Start/End: Complemental strand, 9894338 - 9894203
Alignment:
Q  246 gaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtga 345  Q
    ||||| ||| ||||||| || |||||||||| ||||| |||| |||||| |||| ||||  |||||||| ||||| || |||||||  ||||||||||||    
T  9894338 gaattatgaactaactctcagtggtcgtttgattgaccgccttccttatccgtaaggataagtagacggtgtgcaagactagtttg--ttgctttggtga 9894241  T
Q  346 gttgcttgagattagcgtggagctacctcgtttactgc 383  Q
    ||||| ||||   |||  |||||| |||||||||||||    
T  9894240 gttgcctgaggaaagctcggagcttcctcgtttactgc 9894203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 289 - 379
Target Start/End: Original strand, 20503087 - 20503172
Alignment:
Q  289 ccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgttta 379  Q
    |||||| ||||||||||||| ||||| ||||||||||||      ||||||||||||||||||||||  |||| |||||||||||||||||    
T  20503087 ccttatccgtatggatgggtggacggtgtgcaggaatag-----attgctttggtgagttgcttgaggatagcttggagctacctcgttta 20503172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 17984503 - 17984565
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    |||||||||||||||| ||||||||| |||||||| ||||||||||||| || |||| |||||    
T  17984503 tggtcgtttggttgaccgcctaccttgttcgtatgaatgggtagacggcttgtaggattagtt 17984565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 18120126 - 18120243
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    ||||||||||||||||| ||||||    ||||||||||| |||||| ||  ||||| |||||||||||| |||||  |||||  |||||| |||| | ||    
T  18120126 tgatagaagtatgataatatgattaatgttgaactgggg-taatatatatgtgatgatagtattctaggaatgttgagtatg--tatgtgttatggaaga 18120222  T
Q  207 atccttgaatgtttatgtttg 227  Q
    ||||||||||| |||||||||    
T  18120223 atccttgaatgcttatgtttg 18120243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 18120013 - 18120065
Alignment:
Q  12 tgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    |||||||||||||| ||||||| ||||||||||||| ||| ||||||||||||    
T  18120013 tgttgagttaattatgctaaataaggaataaggtgattaaatcttatattgat 18120065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 25261619 - 25261548
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctt 339  Q
    |||||||||||||||| || |||||||||| |||||||||||||||  |||||| || ||| |||||||||||    
T  25261619 tggtcgtttggttgaccgcttaccttattcatatggatgggtagacaacgtgcatgattag-ttgctttgctt 25261548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 351
Target Start/End: Complemental strand, 21675769 - 21675657
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag-tttgctttgc 337  Q
    ||||| |||| || || ||||| |||| |||||||||||||||| |||| |||||||| | || || |||||||   ||||| |||||| ||||||||||    
T  21675769 taattgtgaaatgcgaactaacccccaatggtcgtttggttgaccgcctgccttattcttttgaattggtagacaatgtgcatgaatagttttgctttgc 21675670  T
Q  338 tttggtgagttgct 351  Q
     |||||||||||||    
T  21675669 -ttggtgagttgct 21675657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 14400218 - 14400279
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    |||||||||||||||  |||||||| ||| ||||||||||||||||| |||||| || |||||    
T  14400218 tggtcgtttggttgaaagcctacct-atttgtatggatgggtagacgacgtgcaagattagtt 14400279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 20178022 - 20178063
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  20178022 ttgttgagttaagtatgctaaatgaagaataaggtgagtaat 20178063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 20222749 - 20222790
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  20222749 ttgttgagttaagtatgctaaatgaagaataaggtgagtaat 20222790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Complemental strand, 22319896 - 22319859
Alignment:
Q  298 tatggatgggtagacggcgtgcaggaatagtttgcttt 335  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  22319896 tatgaatgggtagacggcgtgcaggattagtttgcttt 22319859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 335
Target Start/End: Complemental strand, 23216926 - 23216894
Alignment:
Q  303 atgggtagacggcgtgcaggaatagtttgcttt 335  Q
    ||||||||||||||||||||| |||||||||||    
T  23216926 atgggtagacggcgtgcaggattagtttgcttt 23216894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 163 - 486
Target Start/End: Complemental strand, 14352707 - 14352387
Alignment:
Q  163 ttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactc 262  Q
    ||||||||||||| |||||  ||||| ||||||| |||| ||||||||||||||| || |||||||||| ||||||  |||||||  ||||| ||||| |    
T  14352707 ttagtattctaggaatgttaagtatgtatatgtgctatgcatgaatccttgaatgcttgtgtttgattatacttta--attatgagatgtgaactaac-c 14352611  T
Q  263 ccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag-tttgctttgctttggtgagttgcttgagattagc 361  Q
     || ||||||||||||||||||  | |||||||| |||| |||||||||| | ||||| || ||| |||| ||||||||| |||||||||||||  ||||    
T  14352610 tcagtggtcgtttggttgactgtgtgccttattcatatgaatgggtagactgtgtgcaagagtaggtttggtttgctttgatgagttgcttgaggatagc 14352511  T
Q  362 gtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatt 461  Q
     |||||||||||| | |||| | ||| ||  ||||||  ||||||| |||||||||| |||| |||||||||||||||||||||||| || |||  ||||    
T  14352510 ttggagctacctcatctactactttt-ggcatcttagtctttagggttctgattaggtgtcggtctttggtgtttacctttattatgactattgaggatt 14352412  T
Q  462 tttgagaccatgtatttatgatgat 486  Q
    |||||||| ||||||| || |||||    
T  14352411 tttgagactatgtattgataatgat 14352387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 239 - 485
Target Start/End: Original strand, 5486591 - 5486841
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt----tgctt 334  Q
    ||||| |||||| |||  |||| |||| |||||||||||||||| |||| ||||||  |||||||||| ||||||| ||||| ||||||||    |||||    
T  5486591 taattgtgaattatgaaataacccccagtggtcgtttggttgaccgccttccttatctgtatggatggatagacggtgtgcatgaatagttgatttgctt 5486690  T
Q  335 tgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtg 433  Q
    |||||||||||||||||||||  |||| |||| ||||||||||||| |  |||| |||||||||||  |||||||||||||||||||| | |||| | ||    
T  5486691 tgctttggtgagttgcttgaggatagcttggatgctacctcgttta-tcaattttggtgtcttagacgttagggctctgattaggggttggtcttcgttg 5486789  T
Q  434 tttacctttattatgtctgttggagatttttgagaccatgtatttatgatga 485  Q
    || | ||||||| ||||| ||| ||||||||||||| ||||||| |||||||    
T  5486790 ttcatctttattttgtctattgaagatttttgagactatgtattgatgatga 5486841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 241 - 485
Target Start/End: Complemental strand, 12974973 - 12974726
Alignment:
Q  241 attatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt----tgctttg 336  Q
    |||||||||||||| || || || | || ||||||||||||| | || |||||| ||||||||||||||||||||||||| || | |||    || ||||    
T  12974973 attatgaattgtgaacttacccctagtgatcgtttggttgaccgtcttccttatccgtatggatgggtagacggcgtgcatgagttgttgctttgttttg 12974874  T
Q  337 ctttggtgagttgcttgag-at-tagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtg 433  Q
    |||| |||||||||| ||| || |||| |||| |||||||| |||||| | ||| ||||||||||| |||| |||||||||||||||||| ||| | ||     
T  12974873 cttttgtgagttgctggaggatatagcttggatgctacctcatttactactttt-ggtgtcttagactttatggctctgattaggggtcggtctgttgt- 12974776  T
Q  434 tttacctttattatgtctgttggagatttttgagaccatgtatttatgatga 485  Q
      || |||||||||||||||||||||||||||| || ||||||| |||||||    
T  12974775 --tatctttattatgtctgttggagatttttgaaactatgtattgatgatga 12974726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 19981343 - 19981437
Alignment:
Q  256 ctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgct 351  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||||||||||| || | ||||||||||||||||||||| |||||||||||||    
T  19981343 ctaacccccattggtcgtttggttgacctcctaccttattcgtatggatgggtaggcgacatgcaggaatagtttgctttgc-ttggtgagttgct 19981437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 239 - 379
Target Start/End: Original strand, 19991970 - 19992108
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| ||||| |||| ||||| |||||||||| | || |||||| ||| ||||||| ||||||| |||||||||||| ||| | ||||    
T  19991970 taattgtgaattatgaactaac-cccagtggtcatttggttgaccgtcttccttatccgtgtggatggatagacggtgtgcaggaatagattg-tgtgct 19992067  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgttta 379  Q
    |||||||||||||||||  |||| |||||||||||||||||    
T  19992068 ttggtgagttgcttgaggatagcttggagctacctcgttta 19992108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 106 - 373
Target Start/End: Complemental strand, 6777895 - 6777629
Alignment:
Q  106 ttgatagaagtatgataacatgatttgcattgaa-ctggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaat 204  Q
    ||||||||||||||||||||||||||| ||||||  ||  ||||||||| |  ||| ||||||| ||||||| ||||  ||||| ||||||| |||| ||    
T  6777895 ttgatagaagtatgataacatgatttgaattgaatttgaagataatattcatgtgaagttagtaatctagggttgttgagtatgtatatgtgctatgcat 6777796  T
Q  205 g-aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatgga 303  Q
    | |||||||||||| ||||||||||||| ||||  ||||| |  | ||| | ||||| || | ||||||||  |||||| |||| || ||||| ||| ||    
T  6777795 gaaatccttgaatgcttatgtttgattatactt--taattgttgaatgttatctaacccctagtggtcgttcagttgaccgcctgcc-tattcatataga 6777699  T
Q  304 tgggtagacggcgtgcaggaatag-tttgctttgctttggtgagttgcttgagattagcgtggagctacct 373  Q
    ||| ||||||||||||| || ||| |||||||||| | ||||||||||| |||  |||| || ||||||||    
T  6777698 tggatagacggcgtgcatgagtagttttgctttgc-taggtgagttgctggaggctagcttgaagctacct 6777629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 9520037 - 9519931
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaa-tgaggaataaggtgagtaattcttatattgatagatcttatgaatgatgag--tttgatgatgattt 97  Q
    ||||||||| | |||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||| |||| | |||||||  ||||||||||||||    
T  9520037 tgaattgtgttggttgagttgattaggctaaaatgaggaataagatgagtaattcttatattgatagatgttataagtgatgagtttttgatgatgattt 9519938  T
Q  98 caagtat 104  Q
     ||||||    
T  9519937 aaagtat 9519931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 245 - 376
Target Start/End: Complemental strand, 11848602 - 11848470
Alignment:
Q  245 tgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatag-tttgctttgctttggt 343  Q
    |||| ||||| ||||| || | |||||||||||||||| ||||||| |||| ||||||||||||||| | | |||| || ||| |||||||||| |||||    
T  11848602 tgaaatgtgaactaacccctagtggtcgtttggttgaccgcctaccatatttgtatggatgggtagaagacatgcatgagtagttttgctttgc-ttggt 11848504  T
Q  344 gagttgcttgagattagcg-tggagctacctcgt 376  Q
    |||||||| |||  ||||| ||||||||||||||    
T  11848503 gagttgctggaggatagcgttggagctacctcgt 11848470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 5486359 - 5486412
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||||||||||||| |||||||||||| |||||||| ||||||||||||||||    
T  5486359 ttgttgagttaattatgctaaatgaggagtaaggtgaataattcttatattgat 5486412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 328
Target Start/End: Original strand, 19729238 - 19729299
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagt 328  Q
    |||||||||||||| | ||||||||||||| || |||||||||||||| |||||||| ||||    
T  19729238 tggtcgtttggttgtccgcctaccttattcatacggatgggtagacggtgtgcaggattagt 19729299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 19978746 - 19978651
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctt 334  Q
    |||||||| ||||| | ||||| | || ||||| |||||||||| ||||||||||||| ||| |||||||||| |||   ||||| ||||||||||    
T  19978746 taattatggattgtaaactaaccctcaatggtcatttggttgaccgcctaccttattcctattgatgggtagaaggcaatcaggactagtttgctt 19978651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16374575 - 16374524
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  |||||||||||  || ||||||||||||||||||||||||||    
T  16374575 tgaattgtacttgttgagttatgtatgctaaatgaggaataaggtgagtaat 16374524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 31162903 - 31162954
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||||  |||||||||||| || | ||||||||||||||||||||||||    
T  31162903 tgaattgtacttgttgagttaagtatgttaaatgaggaataaggtgagtaat 31162954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 13192116 - 13192061
Alignment:
Q  298 tatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgag 355  Q
    ||||||||||||||||| ||||| || |||||||  |||||| |||||||||||||||    
T  13192116 tatggatgggtagacggtgtgcaagactagtttg--ttgcttgggtgagttgcttgag 13192061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4173714 - 4173763
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagta 50  Q
    ||||||||  |||||||||||| || ||||||||| ||||||||||||||    
T  4173714 tgaattgtacttgttgagttaagtatgctaaatgaagaataaggtgagta 4173763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 4229323 - 4229372
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagta 50  Q
    ||||||||  |||||||||||| || ||||||||| ||||||||||||||    
T  4229323 tgaattgtacttgttgagttaagtatgctaaatgaagaataaggtgagta 4229372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 329
Target Start/End: Original strand, 12478405 - 12478570
Alignment:
Q  162 gttagtattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaatgtttatgtttgattagactttataattatgaattgtgagctaac 260  Q
    |||||||||||| | |||||  ||||| ||||||| |||| || || |||||||||| ||||||||||||| ||||| |  |  || ||||| | ||| |    
T  12478405 gttagtattctatgaatgttgagtatgtatatgtgctatgcataaaatccttgaatgcttatgtttgattatacttttt--tggtggattgttatctagc 12478502  T
Q  261 tcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
     |||| |||||||||||||||  ||||  | |||||||||| ||||||||  ||| ||||||| |||||    
T  12478503 ccccagtggtcgtttggttgaacgcctgtc-tattcgtatgaatgggtagctggcttgcaggattagtt 12478570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 4174611 - 4174643
Alignment:
Q  297 gtatggatgggtagacggcgtgcaggaatagtt 329  Q
    ||||||||||||||||||||||||||| |||||    
T  4174611 gtatggatgggtagacggcgtgcaggagtagtt 4174643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 16374407 - 16374323
Alignment:
Q  142 ggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgttt 226  Q
    ||||||||||| ||  || || |||||||||||| |||||  |||||  ||| ||  ||| ||||||||||||||||||||||||    
T  16374407 ggggataatatatatgtggtggtagtattctaggaatgttgagtatgtgtatttgtcatgcatgaatccttgaatgtttatgttt 16374323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 20891798 - 20891735
Alignment:
Q  257 taactcccattggtcgtttggttgactgcctaccttattcgtatggatgg-gtagacggcgtgca 320  Q
    ||||||||| |||||||||||||||| |||||||  ||| ||||| |||| ||||||||||||||    
T  20891798 taactcccagtggtcgtttggttgaccgcctacc-catttgtatgaatggtgtagacggcgtgca 20891735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 91; Significance: 7e-44; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 239 - 485
Target Start/End: Complemental strand, 235646 - 235407
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    |||||||||||| ||| ||||| |||| |||| ||||||||||| | || |||||| |||||||||||||||| || |||||||||||| ||||||||      
T  235646 taattatgaattatgaactaacccccaatggttgtttggttgaccgtcttccttatccgtatggatgggtagatggtgtgcaggaatagattgctttg-- 235549  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttac 438  Q
       || |||||||||||  |||| ||||||||||||||||| ||| ||| ||  |||||||||| |||||||||||||||||||| |||| | ||||||     
T  235548 ---gtaagttgcttgaggatagcttggagctacctcgtttattgctttt-ggcatcttagattt-agggctctgattaggggtcggtcttcgatgtttag 235454  T
Q  439 ctttattatgtctgttggagatttttgagaccatgtatttatgatga 485  Q
    ||||||||||| ||||| | |||| |||||| ||||||| |||||||    
T  235453 ctttattatgtttgttgaatatttctgagactatgtattgatgatga 235407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 4e-39; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 111 - 485
Target Start/End: Complemental strand, 22911366 - 22911004
Alignment:
Q  111 agaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaatcc 210  Q
    |||||||||||||||| |||    |||||||||||||||||| ||  ||||| |||||||||||| |||||  || || || |||| |||| |||||||     
T  22911366 agaagtatgataacattattgatgttgaactggggataatatatatgtgatggtagtattctaggaatgttgagtgtgtatttgtgttatgcatgaatca 22911267  T
Q  211 ttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtag 310  Q
    ||||| | ||||| ||||||| | |||   |||||||||||||  ||||| || | |||||||||||||||| |||| |||||| |||||||||||||||    
T  22911266 ttgaacgcttatgcttgattatattttg--attatgaattgtggactaaccccgagtggtcgtttggttgaccgccttccttatccgtatggatgggtag 22911169  T
Q  311 acggcgtgcaggaatag----tttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagg 406  Q
    |||| ||||||||||||    |||||||| |||| ||||||| |||              |||||||| |||| |   ||| |||||||||||  |||||    
T  22911168 acggtgtgcaggaatagttgttttgctttacttttgtgagtttctt-------------tgctacctcattta-tcgtttttggtgtcttagacgttagg 22911083  T
Q  407 gctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagatttttgagaccatgtatttatgatga 485  Q
    ||||||||||||||||| || | | |||||||||||||| | ||| ||||||||||||||||| ||| ||| |||||||    
T  22911082 gctctgattaggggtcggtcatcgttgtttacctttattttttctattggagatttttgagactatgcattgatgatga 22911004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 109 - 476
Target Start/End: Complemental strand, 39607116 - 39606755
Alignment:
Q  109 atagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaat 208  Q
    |||||||| |||||||||||| || || |||   ||||||||||| |  |   ||||| |||||||| |||||  ||||| |||| ||||||| ||||||    
T  39607116 atagaagtgtgataacatgatgtgtatggaatgagggataatattcatgtagagttagcattctaggaatgttgagtatgtatatttgatatgtatgaat 39607017  T
Q  209 ccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggt 308  Q
    |||| |||  ||||||| |||||   | | ||||| ||||   ||| ||||| |||| |||||||||||||||  | |  |||||| | ||||||||| |    
T  39607016 ccttcaatacttatgttagatta---tgtttaattgtgaaaactgaactaacccccagtggtcgtttggttgatcgtcatccttatccatatggatggat 39606920  T
Q  309 agacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggc 408  Q
    |||| | ||||| || ||||||| |||||||||| |||| |||||||  |||| |||||||||||||| |||||| ||| |||| ||| | |||||||||    
T  39606919 agacagtgtgcaagagtagtttg-tttgctttgg-gagtcgcttgaggatagcttggagctacctcgtctactgctttt-ggtgccttggtttttagggc 39606823  T
Q  409 tctgattaggggtcgttctttggtgtttaccttta-ttatgtctgttggagatttttgagaccatgtat 476  Q
    |||||||| | |||| |||||| |||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  39606822 tctgattacgagtcggtctttgatgtttgtctttatttatgtctgttggaga-ttttgagacgatgtat 39606755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 121 - 339
Target Start/End: Complemental strand, 22949658 - 22949443
Alignment:
Q  121 taacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaatgtt 219  Q
    |||||||||||| ||||||||||| || ||||| |  ||||  |||||||||||| |||||  ||||| |||| ||||||| | ||| ||||||||||      
T  22949658 taacatgatttgtattgaactggg-atgatattcatgtgataatagtattctaggaatgttgagtatgtatatttgatatgcaggaaatccttgaatgcc 22949560  T
Q  220 tatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgc 319  Q
    |||||||||||| | ||   ||||||| | || || ||||| |||| |||||||||||||||| |||||||||||  || |||||||||||||| |||||    
T  22949559 tatgtttgattatattt---aattatggaatgcgaactaacccccagtggtcgtttggttgaccgcctaccttatctgtgtggatgggtagacgacgtgc 22949463  T
Q  320 aggaatagtttgctttgctt 339  Q
    |||| |||||||||| ||||    
T  22949462 aggattagtttgcttggctt 22949443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 206 - 378
Target Start/End: Complemental strand, 24192158 - 24191987
Alignment:
Q  206 aatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatg 305  Q
    |||||||||||| |||||||||| || || |||  |||||||  ||||| ||||| |||| |||| ||||||||||  || |||||||||| | ||||||    
T  24192158 aatccttgaatgcttatgtttgaatatacctta--attatgagatgtgaactaacccccagtggttgtttggttgatcgcataccttattcttttggatg 24192061  T
Q  306 ggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagc-gtggagctacctcgttt 378  Q
    ||||||||| ||||| ||||||||||||||   ||||||||||||| ||| |||||  ||||||||||||||||    
T  24192060 ggtagacggtgtgcatgaatagtttgctttagcttggtgagttgctagaggttagctttggagctacctcgttt 24191987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 358
Target Start/End: Original strand, 10178938 - 10179125
Alignment:
Q  163 ttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactc 262  Q
    ||||||||||| | |||||  ||||| ||||||| |||| ||||||| ||||||||||||||||||||| ||||  |||||||  | |||| |||||  |    
T  10178938 ttagtattctatgaatgttgagtatgtatatgtgctatgcatgaatctttgaatgtttatgtttgattatactt--taattatagaatgtg-gctaa--c 10179032  T
Q  263 ccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagatt 358  Q
    ||| |||||||| ||||||| |||| |||||||| |||| ||  ||||||| |||||| || |||||| |||||| ||||||||||| ||||||||    
T  10179033 ccagtggtcgttcggttgaccgcctgccttattcttatgaat-agtagacgacgtgcatgagtagttttctttgc-ttggtgagttg-ttgagatt 10179125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 339
Target Start/End: Complemental strand, 25340745 - 25340648
Alignment:
Q  242 ttatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctt 339  Q
    ||||||| ||||| ||||| || | ||||| |||||||||| ||||||||| |||||||||||| |||||||  |||||||| |||||||||||||||    
T  25340745 ttatgaaatgtgaactaacccctagtggtcatttggttgaccgcctaccttgttcgtatggatgagtagacgatgtgcaggagtagtttgctttgctt 25340648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 262 - 341
Target Start/End: Original strand, 20846574 - 20846653
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttg 341  Q
    |||| |||||||||||||||  || |||||||||||||||||||||||||||||||||| || || ||| ||||||||||    
T  20846574 cccagtggtcgtttggttgatcgcataccttattcgtatggatgggtagacggcgtgcatgattaattttctttgctttg 20846653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 239 - 329
Target Start/End: Complemental strand, 17362527 - 17362437
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    ||||| |||| ||| | ||||| |||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||| || |||||    
T  17362527 taattgtgaagtgttatctaacccccaatggtcgtttggttgaccaccaaccttattcgtatggatgggtagacggcgtgcatgattagtt 17362437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 239 - 416
Target Start/End: Complemental strand, 19266698 - 19266528
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| ||||| |||| |||||||||||||||  | || |||||| ||||||||| ||||||||| |||||| ||||       |||||    
T  19266698 taattgtgaattatgaactaacccccagtggtcgtttggttgatcgtcttccttatccgtatggataggtagacggtgtgcagaaata-----tattgct 19266604  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgatta 416  Q
    |||||||||| ||||||  |||| ||||||||| ||||||| ||| ||| || |||||||| |||| |||||||||||    
T  19266603 ttggtgagtttcttgaggatagcttggagctacatcgtttattgc-ttttggcgtcttaga-tttacggctctgatta 19266528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 21297984 - 21297921
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||||||  |||||||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  21297984 tgaattgtatttgttgagttaattatcctaaatgaggaataaggtgaataattcttatattgat 21297921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 267 - 347
Target Start/End: Original strand, 19318397 - 19318475
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagt 347  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||| | |||| ||| |||||||  ||||||||||    
T  19318397 tggtcgtttg-ttgactgcctaccttattcgtttggatgggtagacggcgcgtaggattag-ttgctttcttttggtgagt 19318475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 21311527 - 21311464
Alignment:
Q  1 tgaattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||||||  |||||||||||||||  ||||||||||||||||| || ||||||||||||||||    
T  21311527 tgaattgtatttgttgagttaattatcctaaatgaggaataaggcgaataattcttatattgat 21311464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 24192363 - 24192307
Alignment:
Q  26 ggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatga 82  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||  ||||||||    
T  24192363 ggctaaatgaggaataaggtgagtaattcttttattgatggatgttacaaatgatga 24192307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 239 - 308
Target Start/End: Complemental strand, 22447098 - 22447030
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggt 308  Q
    |||||||||||||||| ||||| || | | |||||||||||||  |||||||||||||||||| ||||||    
T  22447098 taattatgaattgtgaactaac-cctagtagtcgtttggttgatcgcctaccttattcgtatgaatgggt 22447030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 378
Target Start/End: Original strand, 22433226 - 22433308
Alignment:
Q  297 gtatggatgggtagacggcgtgcaggaata-gtttgctttgctttggtgagtt-gcttgagattagcgtggagctacctcgttt 378  Q
    |||||||||||||||||| ||||| || ||  ||||| ||||||||||||||| |||||||  |||| ||||||||||||||||    
T  22433226 gtatggatgggtagacggtgtgcatgattatatttgc-ttgctttggtgagttggcttgaggatagcttggagctacctcgttt 22433308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 52
Target Start/End: Original strand, 20456145 - 20456194
Alignment:
Q  3 aattgtgattgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    ||||||| |||||||||||| || ||||||||| |||||| |||||||||    
T  20456145 aattgtgcttgttgagttaagtatgctaaatgaagaataatgtgagtaat 20456194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 239 - 486
Target Start/End: Original strand, 21199489 - 21199735
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||||||| |||||||| | |||||||||||||||| ||||| |||||||||||||||||| ||  ||| |||| || ||| ||||||| |     
T  21199489 taattgtgaattgtgaactaactcctagtggtcgtttggttgaccgcctatcttattcgtatggatgggcagttggcatgcaagactag-ttgctttac- 21199586  T
Q  339 ttggtgagttgcttgagattagcgtgga-gctacctcg-tttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgttt 436  Q
    |||||||||||||| ||  |||| |||| ||||||| | |||||||| |||||||||||||||   ||||||| |||||||||| || |||| | | |||    
T  21199587 ttggtgagttgctttaggatagcttggatgctaccttgttttactgc-tttcggtgtcttagacactagggctgtgattagggggcggtcttggatattt 21199685  T
Q  437 acctttattatgtctgttggagatttttgagaccatgtatttatgatgat 486  Q
    || ||||||||||||||| |||||||||||||  |||||||  |||||||    
T  21199686 acttttattatgtctgtttgagatttttgagattatgtattggtgatgat 21199735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 245 - 423
Target Start/End: Complemental strand, 20406476 - 20406301
Alignment:
Q  245 tgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtg 344  Q
    |||||||||| ||||| |||| |||| ||||||||||| ||||||||||||| |||  ||||||||||||||||||||| ||| ||||||||| ||| ||    
T  20406476 tgaattgtgaactaac-cccaatggtagtttggttgaccgcctaccttattcttataaatgggtagacggcgtgcaggactag-ttgctttgc-ttgatg 20406380  T
Q  345 agttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcg 423  Q
    |||||||||||  |||| |||| |||||||| |||||||  ||| ||||||||||   |||||||||| |||||||||||    
T  20406379 agttgcttgaggatagcttggatgctacctcttttactg-ttttaggtgtcttagtcattagggctctaattaggggtcg 20406301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 256 - 379
Target Start/End: Complemental strand, 21417048 - 21416926
Alignment:
Q  256 ctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgag 355  Q
    |||||||| | ||||||||||| |||| |||| |||||| |||||||||| ||| || | |||||||||||| |||| ||||||||||||||||||||||    
T  21417048 ctaactcctagtggtcgtttggctgaccgccttccttatccgtatggatgagtatacagtgtgcaggaatagattgc-ttgctttggtgagttgcttgag 21416950  T
Q  356 attagcgtggagctacctcgttta 379  Q
      |||| || ||||||||||||||    
T  21416949 gatagcttgaagctacctcgttta 21416926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 231
Target Start/End: Original strand, 17614485 - 17614609
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatga 206  Q
    ||||||||||||||||||||||||    ||||||| ||||||| || ||  ||||| |||||||||||| |||||  ||||| ||||||| | || ||||    
T  17614485 tgatagaagtatgataacatgattgatgttgaactagggataagatatatgtgatggtagtattctaggaatgttaagtatgtatatgtgttttgcatga 17614584  T
Q  207 atccttgaatgtttatgtttgatta 231  Q
    |||||| |||| ||||| |||||||    
T  17614585 atccttaaatgcttatgcttgatta 17614609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 18623730 - 18623837
Alignment:
Q  246 gaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtga 345  Q
    ||||| ||| |||||||| | | || ||||||||||  |||| ||||||  |||||||||||||||| | ||||| || |||||||  ||||||||||||    
T  18623730 gaattatgaactaactcctagtcgttgtttggttgaacgccttccttatctgtatggatgggtagacagtgtgcatgactagtttg--ttgctttggtga 18623827  T
Q  346 gttgcttgag 355  Q
    ||||||||||    
T  18623828 gttgcttgag 18623837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 320
Target Start/End: Original strand, 15807031 - 15807165
Alignment:
Q  185 tatgcatatgtgatatgaatgaa-tccttgaatgtttatgtttgattagactttataattatgaattgtgagctaactcccattggtcgtttggttgact 283  Q
    |||| ||||||| |||| ||||| |||||||||| |||||||||||||  |||||  ||| || | ||| | ||||| || | ||||||||||||||||     
T  15807031 tatgtatatgtgttatgcatgaaatccttgaatgcttatgtttgattatgcttta--attgtggaatgttatctaacccctagtggtcgtttggttgacc 15807128  T
Q  284 gcctaccttattcgtatggatgggtagacggcgtgca 320  Q
     |||||||||| | | |||||||||||||| ||||||    
T  15807129 acctaccttatccatgtggatgggtagacgacgtgca 15807165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 313
Target Start/End: Complemental strand, 30821651 - 30821605
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    |||||||||||||||| ||||||||||||| |||| |||||||||||    
T  30821651 tggtcgtttggttgaccgcctaccttattcttatgaatgggtagacg 30821605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 22612219 - 22612176
Alignment:
Q  270 tcgtttggttgactgcctaccttattcgtatggatgggtagacg 313  Q
    ||||||| || || ||||||||||||||||||||||||||||||    
T  22612219 tcgtttgatttaccgcctaccttattcgtatggatgggtagacg 22612176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 78102 - 78143
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||||| ||||||||||||||||    
T  78102 ttgttgagttaagtatgctaaatgaagaataaggtgagtaat 78143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 52
Target Start/End: Complemental strand, 20192312 - 20192271
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaat 52  Q
    |||||||||||| || ||||||| ||||||||||||||||||    
T  20192312 ttgttgagttaagtatgctaaattaggaataaggtgagtaat 20192271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 225
Target Start/End: Complemental strand, 20820836 - 20820768
Alignment:
Q  158 tgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaa-tccttgaatgtttatgtt 225  Q
    ||||||||||||||||||   | | |||||| ||||||| |||| ||||| ||||||||||||||||||    
T  20820836 tgatgttagtattctaggagggatgggtatgtatatgtgttatgcatgaaatccttgaatgtttatgtt 20820768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 23601215 - 23601139
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagtt 348  Q
    |||||||||||||||| |||| |||||||| |    |||||||||||  ||||||||  || ||||||||||||||||||||    
T  23601215 tggtcgtttggttgaccgcctgccttattctt----atgggtagacgatgtgcaggagcag-ttgctttgctttggtgagtt 23601139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 40438175 - 40438228
Alignment:
Q  296 cgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttg 353  Q
    ||||||||||||||||||| ||||| || |||||||||    ||||||||||||||||    
T  40438175 cgtatggatgggtagacggagtgcatgattagtttgct----tttggtgagttgcttg 40438228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 285 - 423
Target Start/End: Complemental strand, 19008 - 18870
Alignment:
Q  285 cctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgagattagcgtgga-gctacctcgtttactgc 383  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||| ||| ||||||||||| ||||||  |||| |||| |||||||| ||||||||    
T  19008 cctaccttattcgtatggatgggtagacagcgtgcataaatagtttgc-ttgttttggtgagttacttgaggatagcttggatgctacctcatttactgc 18910  T
Q  384 atttcggtgtcttagattttagggctctgattaggggtcg 423  Q
    |||| | ||||||||| |||||| ||||||||||||||||    
T  18909 attttgatgtcttagactttaggactctgattaggggtcg 18870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0333 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 162 - 355
Target Start/End: Original strand, 4276 - 4467
Alignment:
Q  162 gttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgtttgattagactttataattatgaattgtgagctaact 261  Q
    |||||||||||||| |||||  ||||  ||||||| |||| ||||||||||||||| ||||||||||||| ||||  ||||| || | || || |||||     
T  4276 gttagtattctaggaatgttgagtatctatatgtgctatgcatgaatccttgaatgcttatgtttgattatactt--taattgtggaatgcgaactaacc 4373  T
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttgag 355  Q
    || | |||||||||||||||| | ||  ||||||| |||| ||||||||| || ||||| || || |||| |||||||||||||||| ||||||    
T  4374 ccaagtggtcgtttggttgaccggctgtcttattcttatgaatgggtagatggtgtgcatgagtaatttgttttgctttggtgagttccttgag 4467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0615 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0615
Description:

Target: scaffold0615; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 239 - 383
Target Start/End: Complemental strand, 5058 - 4915
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| ||||| ||||||| || |||||||||| |||| ||||||||||||| ||||||| |||| ||||| || ||| |||| || ||    
T  5058 taattgtgaattatgaactaacccccattgatcatttggttgaccgccttccttattcgtatgaatgggtacacggtgtgcatgattagattgc-ttcct 4960  T
Q  339 ttggtgagttgcttgagattagcgtggagctacctcgtttactgc 383  Q
    ||||| |||||||||||  |||| |||||||||||||||||||||    
T  4959 ttggtaagttgcttgaggatagcttggagctacctcgtttactgc 4915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 17376 - 17477
Alignment:
Q  249 ttgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagtt 348  Q
    |||||| ||||| |||| |||||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||| ||| ||||||||| ||||||||||    
T  17376 ttgtgaactaac-cccaatggtcgtttggttgaccgcctaccttattcgtatggataggttgacagcgtgcaggagtag-ttgctttgcattggtgagtt 17473  T
Q  349 gctt 352  Q
    ||||    
T  17474 gctt 17477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 239 - 423
Target Start/End: Complemental strand, 50424 - 50242
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||||||| ||||   ||| |||||||||||||||| ||||||||||||| |||  ||||||||||| ||||||||| ||| | ||||||||    
T  50424 taattgtgaattgtgaactaagctccagtggtcgtttggttgaccgcctaccttattcttataaatgggtagacgacgtgcaggactag-tcgctttgct 50326  T
Q  339 ttggtgagttgcttgagattagcgtgga-gctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcg 423  Q
    || |||||||||||| |  |||  |||| ||||||||||||||||  |||| |||||||||  ||||||  ||||| |||||||||    
T  50325 tt-gtgagttgcttgcggatagtttggatgctacctcgtttactgtctttc-gtgtcttagtctttaggtttctgagtaggggtcg 50242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 245 - 474
Target Start/End: Complemental strand, 6985 - 6764
Alignment:
Q  245 tgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtg 344  Q
    |||||| ||| ||||| |||| |||||||||||||||| || | |||||| | ||| ||||||||||||  || ||||||||| ||    ||||||||||    
T  6985 tgaattatgaactaac-cccagtggtcgtttggttgaccgcattccttatccatattgatgggtagacgatgttcaggaatagatt----tgctttggtg 6891  T
Q  345 agttgcttgagattagcgtggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttat 444  Q
    |||||||||||  |||| | ||||||| ||||||| ||| ||| || |||||||| |||||||||||||||| |||||| |||| |  ||||| ||||||    
T  6890 agttgcttgaggatagctttgagctacttcgtttattgc-ttttggcgtcttaga-tttagggctctgattaagggtcggtcttcgacgtttatctttat 6793  T
Q  445 tatgtctgttggagatttttgagaccatgt 474  Q
    | ||| ||||  | ||||||||||| ||||    
T  6792 tttgt-tgttaaacatttttgagactatgt 6764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 320
Target Start/End: Complemental strand, 79121 - 79038
Alignment:
Q  239 taattatgaattgtgagctaactcccat--tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgca 320  Q
    |||||||||||||||| |||| |||| |  ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||    
T  79121 taattatgaattgtgaactaattcccctagtggccgtttggttgaccgcctaccttattcgtatggatgggtagacggtgtgca 79038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 218095 - 218210
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct 338  Q
    ||||| |||||| ||| ||||| || |  ||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||| |||||||||     
T  218095 taattgtgaattatgaactaaccccgagaggtcgtttggttgaccgcctaccttattcgtatggatgggtagacagtgtgcaggagtag-ttgctttgca 218193  T
Q  339 ttggtgagttgcttgag 355  Q
    ||| || ||| ||||||    
T  218194 ttgctgggtttcttgag 218210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 38239 - 38289
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatatt 61  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38239 ttgttgagttaattatgctaaatgaggaataaggtgagtaattcttatatt 38289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 137 - 328
Target Start/End: Original strand, 64234 - 64421
Alignment:
Q  137 gaactggggataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaatgaatccttgaatgtttatgtttgattagactt 236  Q
    ||||||||| |||||| ||  ||||| ||||||||| || |||||  ||||| ||||||| | || ||||||||||||||||||| | ||| |||  |||    
T  64234 gaactgggg-taatatatatgtgatggtagtattcttggaatgttgagtatgtatatgtgttgtgcatgaatccttgaatgtttaagcttgtttatgctt 64332  T
Q  237 tataattatgaattgtga-gctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagt 328  Q
     || || |||  |||||| |||||| | || |||||||||||||||| |||||||| ||| ||||| |||||||||| |||||||||||||||    
T  64333 gattatgatg--ttgtgaagctaac-cgcagtggtcgtttggttgaccgcctacct-atttgtatgaatgggtagacagcgtgcaggaatagt 64421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1121 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold1121
Description:

Target: scaffold1121; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 2626 - 2567
Alignment:
Q  270 tcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |||||    
T  2626 tcgtttggttgaccgcctaccttattcgtatggatgggtagatggcatgcaggagtagtt 2567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 289 - 379
Target Start/End: Complemental strand, 18826 - 18736
Alignment:
Q  289 ccttattcgtatggatgggtagacggcgtgcaggaatag-tttgctttgctttggtgagttgcttgagattagcgtggagctacctcgttta 379  Q
    |||||| ||||||||||| ||||||| ||| |||||||  ||||||| ||||||||||||||||| ||  ||||||||||||||||||||||    
T  18826 ccttatccgtatggatggatagacggtgtgtaggaataaatttgctt-gctttggtgagttgcttaaggatagcgtggagctacctcgttta 18736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1885 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold1885
Description:

Target: scaffold1885; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 893 - 970
Alignment:
Q  270 tcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagtt 348  Q
    ||||||||||||| |||| |||||||| |||| ||||||||| ||||||||||| |||||| |||| ||||||||||||    
T  893 tcgtttggttgaccgcctgccttattcttatgaatgggtagaaggcgtgcaggagtagttt-cttttctttggtgagtt 970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 363 - 485
Target Start/End: Complemental strand, 201546 - 201426
Alignment:
Q  363 tggagctacctcgtttactgcatttcggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttggagattt 462  Q
    ||||||||||||||||| ||  ||| |  ||||||||||| ||| |||||||||||||||| |||| |  ||||| | |||||||||| |||| | ||||    
T  201546 tggagctacctcgtttattgttttt-gacgtcttagattt-aggactctgattaggggtcggtcttcgacgtttatcattattatgtcagttgaatattt 201449  T
Q  463 ttgagaccatgtatttatgatga 485  Q
    ||||||| ||||||| |||||||    
T  201448 ttgagactatgtattgatgatga 201426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 354
Target Start/End: Complemental strand, 5094 - 5029
Alignment:
Q  289 ccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttggtgagttgcttga 354  Q
    |||||| ||||||||||||||||| | ||||| ||||||| || ||||||||||||| ||||||||    
T  5094 ccttatccgtatggatgggtagacagtgtgcaagaatagtctgttttgctttggtgaattgcttga 5029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 3921 - 3868
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgat 64  Q
    ||||| ||||||||| |||||||||||||| |||||||||| ||||||||||||    
T  3921 ttgtttagttaattatgctaaatgaggaatgaggtgagtaagtcttatattgat 3868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 10294 - 10426
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggg--gataatatttagctgatgttagtattctagggatgtttggtatgcatatgtgatatgaat 204  Q
    ||||| |||||||||||||||||||| |||||| |  |  ||||||||| |  ||  ||||||||||||||  ||||  ||||| ||||||| |||| ||    
T  10294 tgataaaagtatgataacatgatttgaattgaattttgaagataatattcatgtggagttagtattctaggactgttgagtatgtatatgtgttatgcat 10393  T
Q  205 gaa-tccttgaatgtttatgtttgattagactt 236  Q
    ||| |||||||||| ||||||||||||| ||||    
T  10394 gaaatccttgaatgcttatgtttgattatactt 10426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 239 - 312
Target Start/End: Original strand, 211812 - 211885
Alignment:
Q  239 taattatgaattgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatgggtagac 312  Q
    |||||||||  ||||| ||||| | || |||||||||||||||  |||||| ||||||||||||||||||||||    
T  211812 taattatgagatgtgaactaaccctcagtggtcgtttggttgatcgcctacattattcgtatggatgggtagac 211885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 307
Target Start/End: Original strand, 17614 - 17673
Alignment:
Q  248 attgtgagctaactcccattggtcgtttggttgactgcctaccttattcgtatggatggg 307  Q
    ||||||| ||||| | || |||||||||||||||| ||||||||||||| ||||||||||    
T  17614 attgtgaactaaccctcactggtcgtttggttgaccgcctaccttattcatatggatggg 17673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 328
Target Start/End: Complemental strand, 5810 - 5760
Alignment:
Q  278 ttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagt 328  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||| ||||    
T  5810 ttgaccgcctaccttattcggatggatgggtagacagcgtgcaggattagt 5760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 267 - 368
Target Start/End: Original strand, 13996 - 14099
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgctttg---gtgagttgcttgagattagcgt 363  Q
    ||||| ||||||||||||||| ||| ||| || || ||||||||||||| ||||||| |   |||||||||||||   ||||||||||||| | ||||||    
T  13996 tggtcatttggttgactgcctgcct-atttgtttgaatgggtagacggcttgcaggatttagttgctttgctttgatagtgagttgcttgacaatagcgt 14094  T
Q  364 ggagc 368  Q
    |||||    
T  14095 ggagc 14099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 21182 - 21255
Alignment:
Q  267 tggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgcttt 340  Q
    |||||||||| || |  |||| |||||||| |||| |||| |||||||||||||||| |||||| |||||||||    
T  21182 tggtcgtttgattaatcgcctgccttattcttatgaatggatagacggcgtgcaggagtagttttctttgcttt 21255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 389 - 455
Target Start/End: Original strand, 21290 - 21356
Alignment:
Q  389 ggtgtcttagattttagggctctgattaggggtcgttctttggtgtttacctttattatgtctgttg 455  Q
    ||||||||||  ||||||||||| |||||| || | | |||||||||||| ||||||||| ||||||    
T  21290 ggtgtcttagtctttagggctctaattaggtgtaggtatttggtgtttacttttattatgactgttg 21356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 34146 - 34206
Alignment:
Q  269 gtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtt 329  Q
    ||||||||||||| ||||||||||||| |||||||||| |||| || ||||| || |||||    
T  34146 gtcgtttggttgattgcctaccttattagtatggatggctagagggtgtgcatgattagtt 34206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 107 - 175
Target Start/End: Complemental strand, 202025 - 201957
Alignment:
Q  107 tgatagaagtatgataacatgatttgcattgaactggggataatatttagctgatgttagtattctagg 175  Q
    |||||||||||||||| ||||||||| |||||| ||  |||| ||||||  ||||| ||||||||||||    
T  202025 tgatagaagtatgatatcatgatttgtattgaattgaagatagtatttatatgatgatagtattctagg 201957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0613 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0613
Description:

Target: scaffold0613; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 2945 - 3036
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgcttt-gctttggtgagttgcttgag 355  Q
    |||| ||||| |||||||||| |||||||| ||| ||||| ||||||||||||| ||||||| |  |||||||| ||||  ||||||||||||||    
T  2945 cccagtggtcatttggttgaccgcctacct-atttgtatgaatgggtagacggcatgcaggattgatttgctttagctt--gtgagttgcttgag 3036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 19903 - 19828
Alignment:
Q  11 ttgttgagttaattaggctaaatgaggaataaggtgagtaattcttatattgatagatcttatgaatgatgagttt 86  Q
    |||||||||||| || | ||||||| ||||||||||||||||||||  |||||| ||| ||   ||||||||||||    
T  19903 ttgttgagttaagtatgataaatgaagaataaggtgagtaattctttcattgattgatattgataatgatgagttt 19828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 80544 - 80486
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtagacggcgtgca 320  Q
    |||| |||||||||||||||| || ||||||||  ||||||||||||| ||| ||||||    
T  80544 cccagtggtcgtttggttgaccgcttaccttatctgtatggatgggtaaacgacgtgca 80486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 355
Target Start/End: Complemental strand, 5632 - 5551
Alignment:
Q  275 tggttgactgcctaccttattcgtatggatgggtagacggcgtgcaggaatagtttgctttgct---ttggtgagttgcttgag 355  Q
    |||| ||| |||||||| ||| ||||| |||||||||||||||||| || ||||||| ||||||   |||||||||||||||||    
T  5632 tggtggaccgcctacct-atttgtatgaatgggtagacggcgtgcatgattagtttg-tttgcttgcttggtgagttgcttgag 5551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Complemental strand, 30552 - 30503
Alignment:
Q  262 cccattggtcgtttggttgactgcctaccttattcgtatggatgggtaga 311  Q
    |||| ||||| ||||||||||| ||||||||||| ||||||||| |||||    
T  30552 cccagtggtcatttggttgactacctaccttatttgtatggatgagtaga 30503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University