View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18346_low_6 (Length: 440)
Name: NF18346_low_6
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_low_6 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Original strand, 46024099 - 46024525
Alignment:
| Q |
14 |
tcatcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctttgtcatatgattctgctgcaaggcttcttagaggaagaaatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024099 |
tcatcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctctgtcatatgattctgctgcaaggcttcttagaggaagaaatg |
46024198 |
T |
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| Q |
114 |
ccaaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024199 |
ccaaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaacca |
46024298 |
T |
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| Q |
214 |
tgcagtttctgcatcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaggaaactatagtctgttctatt |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
46024299 |
tgcagtttcttcatcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaagaaactatagtttgttctatt |
46024398 |
T |
|
| Q |
314 |
cctgatgatgaaggttctacagctgcagggtgtagtggaatttcatttggaaattctaaggtttattcttctgttgttgttgctccttctttcagcgctt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46024399 |
cctgatgatgaaggttctacagctgcagggtgtagtggaatttcatttggaaattctaaggtttattcttctgttgttgttgctccttctttcagcgctt |
46024498 |
T |
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| Q |
414 |
cttaattctcattgttaattaattaaa |
440 |
Q |
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| T |
46024499 |
cttaattctcattgttaattaattaaa |
46024525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Complemental strand, 46265268 - 46264842
Alignment:
| Q |
14 |
tcatcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctttgtcatatgattctgctgcaaggcttcttagaggaagaaatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46265268 |
tcatcacagaaactaagactatggttaggtacttttgatagagcagaagatgctgctctgtcatatgattctgctgcaaggcttcttagaggaagaaatg |
46265169 |
T |
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| Q |
114 |
ccaaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaacca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46265168 |
ccaaaactaactttccaaatactcatgaacaagatttcagcattttagggaagaatcctagagcttttcagcttcttaagcatgcaatgatgaagaacca |
46265069 |
T |
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| Q |
214 |
tgcagtttctgcatcatcatctgtttattccactgtcatgatgccatggaaaaatgaccaacttgacgcgattgttgaggaaactatagtctgttctatt |
313 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
46265068 |
tgcagtttcttaatcatcatctgtttattccactgtcatgatgccatggtaaaatgaccaacttgacgcgattgttgaagaaactatagtttgttctatt |
46264969 |
T |
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| Q |
314 |
cctgatgatgaaggttctacagctgcagggtgtagtggaatttcatttggaaattctaaggtttattcttctgttgttgttgctccttctttcagcgctt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46264968 |
cctgatgatgaaggttctacagctgcagggtgtagtggaatttcatttggaaattctaaggtttattcttctgttgttgttgctccttctttcagcgctt |
46264869 |
T |
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| Q |
414 |
cttaattctcattgttaattaattaaa |
440 |
Q |
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|||||||||||||||||||||| |||| |
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| T |
46264868 |
cttaattctcattgttaattaactaaa |
46264842 |
T |
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