View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18346_low_8 (Length: 366)

Name: NF18346_low_8
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18346_low_8
NF18346_low_8
[»] chr8 (3 HSPs)
chr8 (17-343)||(45505743-45506069)
chr8 (334-366)||(7016979-7017011)
chr8 (334-366)||(14122135-14122167)
[»] chr5 (2 HSPs)
chr5 (332-366)||(34449466-34449500)
chr5 (338-366)||(5747260-5747288)
[»] chr2 (1 HSPs)
chr2 (334-366)||(45070698-45070730)
[»] scaffold0041 (1 HSPs)
scaffold0041 (332-366)||(28559-28593)
[»] scaffold0085 (1 HSPs)
scaffold0085 (337-366)||(39920-39949)
[»] chr4 (7 HSPs)
chr4 (333-366)||(1620432-1620465)
chr4 (333-366)||(8080551-8080584)
chr4 (332-361)||(20650790-20650819)
chr4 (333-366)||(23457802-23457835)
chr4 (334-366)||(2514775-2514807)
chr4 (334-366)||(23473871-23473903)
chr4 (334-366)||(44370299-44370331)
[»] chr7 (1 HSPs)
chr7 (334-366)||(28898529-28898561)
[»] chr6 (1 HSPs)
chr6 (334-366)||(14257646-14257678)
[»] chr3 (1 HSPs)
chr3 (338-366)||(20275251-20275279)
[»] chr1 (2 HSPs)
chr1 (334-366)||(11371555-11371587)
chr1 (330-366)||(26073269-26073305)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 343
Target Start/End: Complemental strand, 45506069 - 45505743
Alignment:
Q  17 cttattattactctaactagtctttaactaagctaccttatcatttctactactcaacccctgatacatgattttcttgagatgatttggtccatgtaaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45506069 cttattattactctaactagtctttaactaagctaccttatcatttctactactcaacccctgatacatgattttcttgagatgatttggtccatgtaaa 45505970  T
Q  117 tcatgtataggaagttgaacttatgaccttatctttaactaagctaaatgatagaagacattggtgagctaaaggacgttggaagaggagggtctcaagt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45505969 tcatgtataggaagttgaacttatgaccttatctttaactaagctaaatgatagaagacattggtgagctaaaggacgttggaagaagagggtctcaagt 45505870  T
Q  217 tcatattggttatggggcatttcctcttccctgccatagattataacctgagtttctggcaactccaacaaggccacaattaacaataatttcttaaaga 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45505869 tcatattggttatggggcatttcctcttccctgccatagattataacctgagtttctggcaactccaacaaggccacaattaacaataatttcttcaaga 45505770  T
Q  317 aaaaacatccaacagtaataaaatcaa 343  Q
    |||||||||||||||||||||||||||    
T  45505769 aaaaacatccaacagtaataaaatcaa 45505743  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 7017011 - 7016979
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||| |||||||||||||||||||||||||    
T  7017011 ataaaattaagggttaaatatgtttttggtccc 7016979  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 14122167 - 14122135
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||| |||||||||||||||||||||||||    
T  14122167 ataaaattaagggttaaatatgtttttggtccc 14122135  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 34449500 - 34449466
Alignment:
Q  332 taataaaatcaagggttaaatatgtttttggtccc 366  Q
    |||||||||||||||||||||||||||||||||||    
T  34449500 taataaaatcaagggttaaatatgtttttggtccc 34449466  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 5747288 - 5747260
Alignment:
Q  338 aatcaagggttaaatatgtttttggtccc 366  Q
    |||||||||||||||||||||||||||||    
T  5747288 aatcaagggttaaatatgtttttggtccc 5747260  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 45070730 - 45070698
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    |||||||||||||||||||||||||||||||||    
T  45070730 ataaaatcaagggttaaatatgtttttggtccc 45070698  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 28593 - 28559
Alignment:
Q  332 taataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||||| |||||||||||||||||||||||||    
T  28593 taataaaataaagggttaaatatgtttttggtccc 28559  T

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Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 337 - 366
Target Start/End: Complemental strand, 39949 - 39920
Alignment:
Q  337 aaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||||||||||||||||||||||||||    
T  39949 aaatcaagggttaaatatgtttttggtccc 39920  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 1620432 - 1620465
Alignment:
Q  333 aataaaatcaagggttaaatatgtttttggtccc 366  Q
    |||||||| |||||||||||||||||||||||||    
T  1620432 aataaaattaagggttaaatatgtttttggtccc 1620465  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Complemental strand, 8080584 - 8080551
Alignment:
Q  333 aataaaatcaagggttaaatatgtttttggtccc 366  Q
    |||||||| |||||||||||||||||||||||||    
T  8080584 aataaaattaagggttaaatatgtttttggtccc 8080551  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 20650819 - 20650790
Alignment:
Q  332 taataaaatcaagggttaaatatgtttttg 361  Q
    ||||||||||||||||||||||||||||||    
T  20650819 taataaaatcaagggttaaatatgtttttg 20650790  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 366
Target Start/End: Original strand, 23457802 - 23457835
Alignment:
Q  333 aataaaatcaagggttaaatatgtttttggtccc 366  Q
    |||||||| |||||||||||||||||||||||||    
T  23457802 aataaaataaagggttaaatatgtttttggtccc 23457835  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 2514807 - 2514775
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||| |||||||||||||||||||||||||    
T  2514807 ataaaataaagggttaaatatgtttttggtccc 2514775  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 23473903 - 23473871
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||||||||||||||||||||||| |||||    
T  23473903 ataaaatcaagggttaaatatgtttttagtccc 23473871  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 44370299 - 44370331
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||| |||||||||||||||||||||||||||    
T  44370299 ataaattcaagggttaaatatgtttttggtccc 44370331  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 28898561 - 28898529
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||| |||||||||||||||||||||||||    
T  28898561 ataaaattaagggttaaatatgtttttggtccc 28898529  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Complemental strand, 14257678 - 14257646
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||| |||||||||||||||||||||||||||    
T  14257678 ataaattcaagggttaaatatgtttttggtccc 14257646  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 20275279 - 20275251
Alignment:
Q  338 aatcaagggttaaatatgtttttggtccc 366  Q
    |||||||||||||||||||||||||||||    
T  20275279 aatcaagggttaaatatgtttttggtccc 20275251  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 334 - 366
Target Start/End: Original strand, 11371555 - 11371587
Alignment:
Q  334 ataaaatcaagggttaaatatgtttttggtccc 366  Q
    ||||||| |||||||||||||||||||||||||    
T  11371555 ataaaataaagggttaaatatgtttttggtccc 11371587  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 330 - 366
Target Start/End: Original strand, 26073269 - 26073305
Alignment:
Q  330 agtaataaaatcaagggttaaatatgtttttggtccc 366  Q
    |||||||| || |||||||||||||||||||||||||    
T  26073269 agtaataatattaagggttaaatatgtttttggtccc 26073305  T

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