View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18346_low_9 (Length: 356)
Name: NF18346_low_9
Description: NF18346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18346_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 337
Target Start/End: Original strand, 29747444 - 29747776
Alignment:
| Q |
5 |
tattaagagcacacgctattgtagaattgcacctaaaagagagtgtagaattgctcctaaaagatacggttgtatgttatgaaaggtagcagtgtgagaa |
104 |
Q |
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| T |
29747444 |
tattaagagcacactctattgtagaattgcacctaaaagagagtgtagaattgctcctaaaagatacggttgtatgttatgaaaggtagcagtgtgagaa |
29747543 |
T |
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| Q |
105 |
ccaaatcaaggctcaaatgaatcgatgttccaattcaaaccaataaatttggttagnnnnnnnnnnnnnnnnnngatgtttggatcaaaaccaaatcaaa |
204 |
Q |
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| T |
29747544 |
ccaaatcaaggctcaaatgaatcgatgttccaattcaaaccaataaatttggttagttttttcttttattttttgatgtttggatcaaaaccaaatcaaa |
29747643 |
T |
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| Q |
205 |
ctaaattgcaataaacgaagctgaaaataagacctaaagttacaaattgcagatcaaaattgaaatagttaaaaggagatatatgaatgcaaattggaaa |
304 |
Q |
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| T |
29747644 |
ctaaattgcaataaaagaagctgaaaataagacctaaagttacaaattgcagatcaaaattgaaacagttaaaaggagatagatgaatgcaaattggaaa |
29747743 |
T |
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| Q |
305 |
ctataccttgtaatttgaatacaatggagatcg |
337 |
Q |
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| T |
29747744 |
ctataccttgtaatttgaatacaatggagatcg |
29747776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 337
Target Start/End: Complemental strand, 29751750 - 29751636
Alignment:
| Q |
217 |
aaacgaagctgaaaataagacctaaagttacaaattgcagatcaaaattgaaatagttaaaaggagatatatgaatgcaaattggaaactataccttgta |
316 |
Q |
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| T |
29751750 |
aaacgaatctgtaaataagacctaaagttacaaattgaagatcaaaat------atgtaaaaggagacagatgaataaaaattggaaactgtaccttgta |
29751657 |
T |
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| Q |
317 |
atttgaatacaatggagatcg |
337 |
Q |
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| T |
29751656 |
atttgaagacgatggagatcg |
29751636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 29747896 - 29747930
Alignment:
| Q |
38 |
taaaagagagtgtagaattgctcctaaaagatacg |
72 |
Q |
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| T |
29747896 |
taaaagagaatgtagaattgctcctaaaagatacg |
29747930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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