View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_10 (Length: 401)
Name: NF18347_high_10
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 382
Target Start/End: Original strand, 29448677 - 29449044
Alignment:
| Q |
15 |
acaaatgatgcagtgaaagtttgtgtcccacgtaaatcatgaataatacccaaaccaaatataagtgatctgaacatggnnnnnnnnnnnnnnnnnngta |
114 |
Q |
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| T |
29448677 |
acaaatgatgcagtgaaagtttgtgtcccacgtaaatcatgaataatacccaaaccaaatataagtgatctgaacatggttttttaactttttttttgta |
29448776 |
T |
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| Q |
115 |
agtggttttttaaccaaattaataggattaatatggccatttgtatttatgatttgaaaaataattctagttacttataatttggctaaacatttaacag |
214 |
Q |
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| T |
29448777 |
agtggttttttaaccaaattaataggattaatatggtcatttgtatttatgatttgaaacataattctagttacttataatttggctaaacatttaacag |
29448876 |
T |
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| Q |
215 |
gtatttccataggttattacaaacccgtcatatatttctcatttcagaacaattttcgcaaggtgaggtgtcagaggtgctttcaagaagcaactgtaag |
314 |
Q |
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| T |
29448877 |
gtatttccataggttattacaaacccgtcatatatttctcatttcagaacaattttcgcaaggtgaggtgtcagaggtgctttcaagaagcaaatgtaag |
29448976 |
T |
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| Q |
315 |
acctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtactacacaaaatctaatac |
382 |
Q |
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| T |
29448977 |
acctttttaaaagaattaatctcaacttccattttaaagaagcaaaggtactacacaaaatctaatac |
29449044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 31 - 366
Target Start/End: Original strand, 29456643 - 29456979
Alignment:
| Q |
31 |
aagtttgtgtcccacgtaaatcatgaataatacccaaaccaaatataagtgatctgaacatggnnnnnnnnnnnnnnnnnn-gtaagtggttttttaacc |
129 |
Q |
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| T |
29456643 |
aagtttgtgtcccacataaatcatgaataatacccaaaccaaacataagtgatctgaacatggttttttaacttctttttttgtaaggggtttttaaac- |
29456741 |
T |
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| Q |
130 |
aaattaataggattaatatggccatttgtatttatgatttgaaaa-ataattctagttacttataatttggctaaacatttaacaggtatttccataggt |
228 |
Q |
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| T |
29456742 |
aaattaataggcttactatggcactttgtatttatgatttgaaaacataatgctagttatttataatttggttaaacatttaaaagg-atttccataggt |
29456840 |
T |
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| Q |
229 |
tattacaaacccgtcatatatttctcattt-cagaacaattttcgcaaggtgaggtgtcagaggtgctttcaagaagcaactgtaagacctttttaaaag |
327 |
Q |
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|||||| ||||| ||||||||||||||||| | || || || ||||||||||||||||||||||||||||||||||| |||||||| |||| |||| |
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| T |
29456841 |
tattacgaacccatcatatatttctcatttgaaaaaaaaaattggcaaggtgaggtgtcagaggtgctttcaagaagcacaggtaagaccatttttaaag |
29456940 |
T |
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| Q |
328 |
aattaatctcaacttccattttaaagaagcaaaggtact |
366 |
Q |
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| T |
29456941 |
aattaatctcaacttccattttaaagaagcaaaggtact |
29456979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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