View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_11 (Length: 359)
Name: NF18347_high_11
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 344
Target Start/End: Complemental strand, 34689723 - 34689378
Alignment:
| Q |
13 |
aatatcttcaatcatttcctaatgtacatcactacattcttgcaattaaattatcaaacaaattaaaaattatctaacatattcattt------------ |
100 |
Q |
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| T |
34689723 |
aatatcttcaatcatttcctaatgtacatcactacattcttgcaattaaattatcaaacaaattaaaaattatctaacatattcattttacagtgtttca |
34689624 |
T |
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| Q |
101 |
---catatgatatttatttattagctaacaaatctaaaattcttgcaattaaattatctgataattcgtagtgtttcagggattgtaggcagctcataaa |
197 |
Q |
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| T |
34689623 |
tttcatatgataattatttattagctaacaaatctaaaattcttgcgattaaattatttg-taattcgtagtgtttcagggattgtaggcagctcataaa |
34689525 |
T |
|
| Q |
198 |
gtgcaccactacatttctttccatgcttttaacaaattctgaatatttgaatccactgattctctcattcattgcagtatagtatgcttgtattcaaacc |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
34689524 |
gtgcaccactacatttctttccatgcttttaacaaattctgaatatttgaatccactgattctctcattcattgcagtataatatgcttatattcaaacc |
34689425 |
T |
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| Q |
298 |
agaagaattctcctagaatagtgcttgatatatatcgtgaacttatt |
344 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34689424 |
agaagaattctcctagaatagtgcttgatatatatcgtgaacttatt |
34689378 |
T |
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