View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18347_high_12 (Length: 351)
Name: NF18347_high_12
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 46997731 - 46998051
Alignment:
| Q |
16 |
caaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46997731 |
caaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaat |
46997830 |
T |
|
| Q |
116 |
gaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46997831 |
gaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggctgatgattggaccataaccttctggaaa |
46997930 |
T |
|
| Q |
216 |
ccatttattgtgagtaggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctcagaaaataagttaaagaaattccaataaccagtt |
315 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46997931 |
ccatctattgtgaataggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctcagaaaatgagttaaagaaattccaataaccagtt |
46998030 |
T |
|
| Q |
316 |
ccatcaccaatacaatgattc |
336 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46998031 |
ccatcaccaatacaatgattc |
46998051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 46974668 - 46974988
Alignment:
| Q |
16 |
caaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaat |
115 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||| ||||| |||||| |||||||| || || |||||||| |||||| |||||||| |||||||||| |
|
|
| T |
46974668 |
caaactaatgctgataaagattgaaacgaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagactcagctgaaaaat |
46974767 |
T |
|
| Q |
116 |
gaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaa |
215 |
Q |
| |
|
| || ||||||||||| ||||| | |||||||||||| |||| |||||| || ||||||||||| ||||||||||| || ||||||||||||| |||||| |
|
|
| T |
46974768 |
ggaagattctctctcttaaaatggatgtttcatatctgtgaacaaactcctcgtgatgtttgaatggaaggttgataatcggaccataaccttgtggaaa |
46974867 |
T |
|
| Q |
216 |
ccatttattgtgagtaggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctcagaaaataagttaaagaaattccaataaccagtt |
315 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
46974868 |
ccatctattgtggataggttgatgtgaaatcggaacaagaacatgaatatcattttgaaatatctcagaaaatgagttaaagaaattccaataaccagtc |
46974967 |
T |
|
| Q |
316 |
ccatcaccaatacaatgattc |
336 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
46974968 |
ccatcacctatacaatgattc |
46974988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 16 - 325
Target Start/End: Original strand, 46995471 - 46995792
Alignment:
| Q |
16 |
caaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaat |
115 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||| |||| || |||||||||| || |||||||| ||||| || ||| ||||||||||||||| |
|
|
| T |
46995471 |
caaactagtgcagataaagattgaaacgaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttttgctataaactctgctgaaaaat |
46995570 |
T |
|
| Q |
116 |
gaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaa |
215 |
Q |
| |
|
| || |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
46995571 |
ggaagattctctctctcaaaataggtgcttcatatctatgaataaactcgtcgtgatgtttgaaaggaaggttgataattggaccatagccttcaggaaa |
46995670 |
T |
|
| Q |
216 |
ccatttattgtgagtaggtttatgtgaaatcggaacaggaacatgaacatca------------ttttgaaatatctcagaaaataagttaaagaaattc |
303 |
Q |
| |
|
|||| |||||||| |||||| |||||||| |||||||||| |||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
46995671 |
ccatctattgtgaataggttggtgtgaaataggaacaggaatatgaacatcaacatcaacaaccttttgaaatatctcagaaagtgtattaaagaaattc |
46995770 |
T |
|
| Q |
304 |
caataaccagttccatcaccaa |
325 |
Q |
| |
|
|||||| ||||||||||||||| |
|
|
| T |
46995771 |
caataagcagttccatcaccaa |
46995792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 16 - 336
Target Start/End: Original strand, 46980657 - 46980975
Alignment:
| Q |
16 |
caaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaat |
115 |
Q |
| |
|
||||||| ||||||||| |||||||| ||||| ||||||||||||| ||||||| || || |||||||||||||| || ||||| || ||||||||| |
|
|
| T |
46980657 |
caaactaatgctgataaagattgaaacgaagaaattttgtttgtattagactctgcatttgcctttgctttaagttttgctatagattccactgaaaaat |
46980756 |
T |
|
| Q |
116 |
gaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaa |
215 |
Q |
| |
|
| || ||||||||||| ||||| |||||||||||||| |||| |||||| | ||||||||||| ||||||||||| |||||||||||||||| |||||| |
|
|
| T |
46980757 |
ggaagattctctctcttaaaatgggtgtttcatatctgtgaacaaactcatggtgatgtttgaatggaaggttgataattggaccataaccttgtggaaa |
46980856 |
T |
|
| Q |
216 |
ccatttattgtgagtaggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctcagaaaataagttaaagaaattccaataaccagtt |
315 |
Q |
| |
|
|||| | ||||| |||||| ||||||||| ||| || | || ||||||||||||||||||||||||||||| ||| ||||||||||||||| | ||| |
|
|
| T |
46980857 |
ccatctcttgtggataggttgatgtgaaatggga--agcagcaggaacatcattttgaaatatctcagaaaatgtgttgaagaaattccaataagctgtt |
46980954 |
T |
|
| Q |
316 |
ccatcaccaatacaatgattc |
336 |
Q |
| |
|
||||||| || |||||||||| |
|
|
| T |
46980955 |
ccatcacaaagacaatgattc |
46980975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 47001394 - 47001589
Alignment:
| Q |
16 |
caaactagtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgc-tttaagtttcgcaatagactctgctgaaaaa |
114 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
47001394 |
caaactagtgctgataaagattgaaacgaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgctatagactctgctgaaaaa |
47001493 |
T |
|
| Q |
115 |
tgaaatattctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttct |
210 |
Q |
| |
|
|| ||||| |||||||||||| |||||| || |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47001494 |
tggaatatcctctctctcaaagtaggtgcttgatatctgtgaataaactcgtcgtgatgtttgaaaggaaggttgatagttggaccataaccttct |
47001589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 196 - 336
Target Start/End: Original strand, 47001603 - 47001743
Alignment:
| Q |
196 |
ggaccataaccttctggaaaccatttattgtgagtaggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctcagaaaataagttaa |
295 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| | |
|
|
| T |
47001603 |
ggaccataaccttctggaaaccatcttttgtgaataggtttatgtgaaatcggaacaggaacatgaacatcattttgaaatatctccgaaaatgtgttga |
47001702 |
T |
|
| Q |
296 |
agaaattccaataaccagttccatcaccaatacaatgattc |
336 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
47001703 |
agaaattccaataagctgttccatcaccaatacaatgattc |
47001743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 23 - 218
Target Start/End: Original strand, 46951236 - 46951431
Alignment:
| Q |
23 |
gtgctgataaggattgaaaagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatat |
122 |
Q |
| |
|
|||||||||| ||||| || ||||||||||||||||||| |||||| | || || || ||||| | || |||||||||||||||| |||||| || | |
|
|
| T |
46951236 |
gtgctgataaagattggaatgaagagattttgtttgtattagactccatattggccttagctttcaactttgcaatagactctgctgtaaaatggaagaa |
46951335 |
T |
|
| Q |
123 |
tctctctctcaaaataggtgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaacca |
218 |
Q |
| |
|
||||||||||| | |||| |||||| ||| |||| |||||||||||||||||| ||||| ||||| | |||||||||||||||||||||||| |
|
|
| T |
46951336 |
tctctctctcagcttgggtggttcatacctagttataatctcgtcatgatgtttgaatggaagattgatcagtggaccataaccttctggaaacca |
46951431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 336
Target Start/End: Original strand, 46951502 - 46951546
Alignment:
| Q |
292 |
ttaaagaaattccaataaccagttccatcaccaatacaatgattc |
336 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
46951502 |
ttaaagaaattccaataagaagttccatcaccaatatagtgattc |
46951546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University