View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_13 (Length: 343)
Name: NF18347_high_13
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 11 - 320
Target Start/End: Complemental strand, 38831292 - 38830983
Alignment:
| Q |
11 |
cacagaaagccaaacgaggcactttcaagacactagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttcttaagtttagc |
110 |
Q |
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| T |
38831292 |
cacagaaagccaaacgaggcactttcaagacactagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttcttaagcttagc |
38831193 |
T |
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| Q |
111 |
caaatcatctttaataccaacactgacaaaggtataatctggcagtcgaagaaagttaagcaatgatgtgggaactgaatctaaatgacacagctgaata |
210 |
Q |
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| T |
38831192 |
caaatcatctttaataccaacactgacaaaggtataatctggcagtcgaagaaagttaagcaatgatgtgggaactgaatctaaatgacatagctgaata |
38831093 |
T |
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| Q |
211 |
ataagacacggctggccattacataggtgcagagttgcacattcggaattgtcgtagatttcttcctctgataccttattttcaaacattgacaactcga |
310 |
Q |
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| T |
38831092 |
ataagacacaactggccattacataggtgcagagttgcacattcggaattgtcgtagatttcttcctctgataccttattttcaaacattgacaactcga |
38830993 |
T |
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| Q |
311 |
catcgaaccc |
320 |
Q |
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|||||||||| |
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| T |
38830992 |
catcgaaccc |
38830983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 40 - 326
Target Start/End: Complemental strand, 38820868 - 38820582
Alignment:
| Q |
40 |
acactagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttcttaagtttagccaaatcatctttaataccaacactgacaa |
139 |
Q |
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| T |
38820868 |
acactagcagccaagggtccaagttccacagcatttctgcatctaaccccatattccttctcaagtttagccaaattatgattgataccaacaccaacaa |
38820769 |
T |
|
| Q |
140 |
aggtataatctggcagtcgaagaaagttaagcaatgatgtgggaactgaatctaaatgacacagctgaataataagacacggctggccattacataggtg |
239 |
Q |
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| T |
38820768 |
aggtataatctggaagacgaagaaaattaagcaatgatgtgggaaatgaatctaaatgacatagctgaataataagacacgaatgaccattgcatagatt |
38820669 |
T |
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| Q |
240 |
cagagttgcacattcggaattgtcgtagatttcttcctctgataccttattttcaaacattgacaactcgacatcgaacccaataac |
326 |
Q |
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| T |
38820668 |
caagattgcacattcggtctcaaaattggtttcttcttctgatactttattttcacacatcgacaactcgatatcaaacccgataac |
38820582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 28159395 - 28159296
Alignment:
| Q |
157 |
cgaagaaagttaagcaatgatgtgggaactgaatctaaatgacacagctgaataataagacacggctggccattacataggtgcagagttgcacattcgg |
256 |
Q |
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|||||||| |||||||||| |||||||| ||||||| ||||||| ||||||||||||||| | | ||| ||||||| |||||||||||| |||||| |
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| T |
28159395 |
cgaagaaaattaagcaatgttgtgggaaatgaatcttaatgacatgactgaataataagacatgaataaccaatacatagatgcagagttgcatattcgg |
28159296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 256
Target Start/End: Complemental strand, 16081974 - 16081884
Alignment:
| Q |
166 |
ttaagcaatgatgtgggaactgaatctaaatgacacagctgaataataagacacggctggccattacataggtgcagagttgcacattcgg |
256 |
Q |
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||||| ||||||||||||| ||||||| ||||||| | |||||||||||| ||| | ||| ||||||| |||||||||||| |||||| |
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| T |
16081974 |
ttaagtaatgatgtgggaaatgaatcttaatgacataactgaataataagtcacaaataaccaatacatagatgcagagttgcatattcgg |
16081884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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