View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18347_high_16 (Length: 326)

Name: NF18347_high_16
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18347_high_16
NF18347_high_16
[»] chr2 (6 HSPs)
chr2 (223-307)||(37093935-37094018)
chr2 (14-105)||(12521393-12521484)
chr2 (134-184)||(37093851-37093901)
chr2 (10-133)||(18452060-18452183)
chr2 (67-133)||(29063407-29063473)
chr2 (67-135)||(15570077-15570145)
[»] chr7 (3 HSPs)
chr7 (14-105)||(13931778-13931869)
chr7 (67-133)||(13909174-13909240)
chr7 (90-133)||(8950341-8950384)
[»] chr8 (5 HSPs)
chr8 (13-105)||(32057293-32057385)
chr8 (11-134)||(23481172-23481295)
chr8 (11-133)||(23485994-23486116)
chr8 (76-134)||(9875155-9875213)
chr8 (76-134)||(122889-122947)
[»] scaffold0122 (1 HSPs)
scaffold0122 (67-133)||(19048-19114)
[»] chr4 (3 HSPs)
chr4 (67-134)||(43266756-43266823)
chr4 (10-50)||(47326191-47326231)
chr4 (10-50)||(47340987-47341027)
[»] chr6 (3 HSPs)
chr6 (67-135)||(12601833-12601901)
chr6 (14-69)||(7652308-7652363)
chr6 (79-133)||(641273-641327)
[»] scaffold0268 (1 HSPs)
scaffold0268 (76-133)||(4242-4299)
[»] chr5 (1 HSPs)
chr5 (79-132)||(13576487-13576540)


Alignment Details
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 223 - 307
Target Start/End: Original strand, 37093935 - 37094018
Alignment:
Q  223 aaagaatagttttatccagatctaaactctgctgcaactttaaatgttgtaagatctgagaaaaggaaactaataaatgaaatac 307  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37093935 aaagaatagttttatcaagatctaaact-tgctgcaactttaaatgttgtaagatctgaaaaaaggaaactaataaatgaaatac 37094018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 12521484 - 12521393
Alignment:
Q  14 agatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtcagcttttaaatgcacaatttatgcatggtgcccaaat 105  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||| || |||||| ||| |||||    
T  12521484 agatctcaaccgttggagtataatattaatatatcaatggttgtaattggctgtcagcttttaaatgcacaagttgtgcatgatgcacaaat 12521393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 37093851 - 37093901
Alignment:
Q  134 tgggttaaggtgaaaacaaggaagtggcaaccaattgcaatgtaagaatag 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37093851 tgggttaaggtgaaaacaaggaagtggcaaccaattgcaatgtaagaatag 37093901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 18452183 - 18452060
Alignment:
Q  10 gcacagatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtcagcttttaaatgcacaatttatgcatggtgcccaaattctt 109  Q
    ||||||||||||||||||||||| | ||||||||| ||||| || |     | | | |||||| ||| |||||||| || |||||||||| ||||||| |    
T  18452183 gcacagatctcaaccgttggaattttatattaataaatcaatggctcagaattgatttcagctcttatatgcacaacttttgcatggtgcacaaattcat 18452084  T
Q  110 catttgtgcataccaaaccccacc 133  Q
    || |||||||||||||||||||||    
T  18452083 cacttgtgcataccaaaccccacc 18452060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 29063473 - 29063407
Alignment:
Q  67 tcagcttttaaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacc 133  Q
    |||||||||||||||||||||| |||||||||| ||||||||   |||||||||||||||| |||||    
T  29063473 tcagcttttaaatgcacaatttgtgcatggtgcacaaattctatctttgtgcataccaaactccacc 29063407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 15570145 - 15570077
Alignment:
Q  67 tcagcttttaaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacctg 135  Q
    |||||| |||||||||||| ||||||||||||| |||||  |||  |||||||| | ||||||||||||    
T  15570145 tcagctcttaaatgcacaacttatgcatggtgcacaaatctttcccttgtgcatgctaaaccccacctg 15570077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 14 - 105
Target Start/End: Original strand, 13931778 - 13931869
Alignment:
Q  14 agatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtcagcttttaaatgcacaatttatgcatggtgcccaaat 105  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| || ||| ||||||||||||||||||| || |||||||||| |||||    
T  13931778 agatctcaaccgttggagtataatattaatatatcaacggttgtaattggctatcagcttttaaatgcacaagttgtgcatggtgcacaaat 13931869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 13909240 - 13909174
Alignment:
Q  67 tcagcttttaaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacc 133  Q
    |||| ||||||||||||||||| |||||||||| |||||  |  ||||||||||||||||| |||||    
T  13909240 tcaggttttaaatgcacaatttgtgcatggtgcacaaatcttatatttgtgcataccaaactccacc 13909174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 8950341 - 8950384
Alignment:
Q  90 tgcatggtgcccaaattcttcatttgtgcataccaaaccccacc 133  Q
    |||||||||| ||||||| ||| |||||||||||||||||||||    
T  8950341 tgcatggtgcacaaattcatcacttgtgcataccaaaccccacc 8950384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 32057385 - 32057293
Alignment:
Q  13 cagatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtcagcttttaaatgcacaatttatgcatggtgcccaaat 105  Q
    |||||||||||||||| | ||||||||||||||||||||||||||| || |||||||| |||||||||||||| || |||||||||| |||||    
T  32057385 cagatctcaaccgttgaagtataatattaatatatcaacggttgtaattggctgtcagtttttaaatgcacaagttgtgcatggtgcacaaat 32057293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 23481172 - 23481295
Alignment:
Q  11 cacagatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtcagcttttaaatgcacaatttatgcatggtgcccaaattcttc 110  Q
    |||||||||||||||||||| | | ||||||||| ||||| ||      || ||||||||||||||||||||||||||||||||||||| |||||  |      
T  23481172 cacagatctcaaccgttggagttttatattaataaatcaatggcccagatttgctgtcagcttttaaatgcacaatttatgcatggtgcacaaatcttgt 23481271  T
Q  111 atttgtgcataccaaaccccacct 134  Q
    ||||||||||| ||||| ||||||    
T  23481272 atttgtgcatatcaaactccacct 23481295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 23485994 - 23486116
Alignment:
Q  11 cacagatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtcagcttttaaatgcacaatttatgcatggtgcccaaattcttc 110  Q
    |||||||||||||||||||| | | ||||||||| ||||| |||     || ||| |||| ||||||||||||||||| |||||||||| |||||| |      
T  23485994 cacagatctcaaccgttggagttttatattaataaatcaatggtccagatttgctttcaggttttaaatgcacaatttgtgcatggtgcacaaattttgt 23486093  T
Q  111 atttgtgcataccaaaccccacc 133  Q
    ||||||||||||||||| |||||    
T  23486094 atttgtgcataccaaactccacc 23486116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 9875155 - 9875213
Alignment:
Q  76 aaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacct 134  Q
    ||||||||||||| |||||||||| |||||   |||||||| |||||||||||||||||    
T  9875155 aaatgcacaatttgtgcatggtgcacaaatctatcatttgtccataccaaaccccacct 9875213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 122947 - 122889
Alignment:
Q  76 aaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacct 134  Q
    ||||||||||||| | |||||||| |||||| |  |||||| |||||||||||||||||    
T  122947 aaatgcacaatttgtacatggtgcacaaattgtatatttgtccataccaaaccccacct 122889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 19114 - 19048
Alignment:
Q  67 tcagcttttaaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacc 133  Q
    ||||||||||||||||||| || |||||||||| |||||||||  |||||||||||||||| |||||    
T  19114 tcagcttttaaatgcacaagttgtgcatggtgcacaaattctttctttgtgcataccaaacgccacc 19048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 43266756 - 43266823
Alignment:
Q  67 tcagcttttaaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacct 134  Q
    |||||||||||||||| || || |||||||||| |||||||||  |||||||||||||||| ||||||    
T  43266756 tcagcttttaaatgcataagttgtgcatggtgcacaaattctttctttgtgcataccaaacgccacct 43266823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 47326191 - 47326231
Alignment:
Q  10 gcacagatctcaaccgttggaatataatattaatatatcaa 50  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  47326191 gcacagatctcaaccgttggaattttatattaataaatcaa 47326231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 47340987 - 47341027
Alignment:
Q  10 gcacagatctcaaccgttggaatataatattaatatatcaa 50  Q
    ||||||||||||||||||||||| | ||||||||| |||||    
T  47340987 gcacagatctcaaccgttggaattttatattaataaatcaa 47341027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 12601833 - 12601901
Alignment:
Q  67 tcagcttttaaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacctg 135  Q
    ||||||||||||||||||| || |||||| ||| || ||||||  |||||||||||||||| |||||||    
T  12601833 tcagcttttaaatgcacaagttgtgcatgatgcacagattctttctttgtgcataccaaacgccacctg 12601901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 69
Target Start/End: Complemental strand, 7652363 - 7652308
Alignment:
Q  14 agatctcaaccgttggaatataatattaatatatcaacggttgtagttagctgtca 69  Q
    ||||||||||  ||||||||||||| || |||||||||||||||| || |||||||    
T  7652363 agatctcaactcttggaatataatactagtatatcaacggttgtaattggctgtca 7652308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 641273 - 641327
Alignment:
Q  79 tgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacc 133  Q
    |||||||||| |||||||||| |||||| |  ||||||||||||||||| |||||    
T  641273 tgcacaatttgtgcatggtgcacaaattttgtatttgtgcataccaaactccacc 641327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 4299 - 4242
Alignment:
Q  76 aaatgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccacc 133  Q
    ||||||||||||| |||||||||| |||||| |  |||||| ||||||||||||||||    
T  4299 aaatgcacaatttgtgcatggtgcacaaattgtatatttgtccataccaaaccccacc 4242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 13576540 - 13576487
Alignment:
Q  79 tgcacaatttatgcatggtgcccaaattcttcatttgtgcataccaaaccccac 132  Q
    ||||||| || |||||||||| ||||||| ||| ||||||||||||||||||||    
T  13576540 tgcacaacttgtgcatggtgcacaaattcatcacttgtgcataccaaaccccac 13576487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University