View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_19 (Length: 286)
Name: NF18347_high_19
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 35850832 - 35851117
Alignment:
| Q |
1 |
attcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatccaattcattcttccgtcgaatcaaatcatcgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35850832 |
attcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatccaattcattcttccgtcgaatcaaatcgtcgtc |
35850931 |
T |
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| Q |
101 |
aaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850932 |
aaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaa |
35851031 |
T |
|
| Q |
201 |
ctcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattc |
286 |
Q |
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| T |
35851032 |
ctcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattc |
35851117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 286
Target Start/End: Original strand, 35841217 - 35841497
Alignment:
| Q |
3 |
tcctcttgatcttccacattcaattcactcgattcttcaataatcttattcaacaacgattgatccaattcattcttccgtcgaatcaaatcatcgtcaa |
102 |
Q |
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||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||||| | |
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| T |
35841217 |
tcctcttgatcttccgcattcaattctctagattcttcaataatcttattcaacaacgattgttccaattcattctttcttcgaatcaaatcatcgtcga |
35841316 |
T |
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| Q |
103 |
aatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaact |
202 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| || || |||||||| |||||||||| ||||| |
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| T |
35841317 |
aatcgcaatcctcaatgagaattctacgaatagcgctactatccaaatcctcaaaaacaccgttctcatactccactctgtaaaaaccgatttcataact |
35841416 |
T |
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| Q |
203 |
caaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttcaattc |
286 |
Q |
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| T |
35841417 |
cataacttttccgatttg---aacggtttctgaaaactctttcaaaacacatcgtccaatcaatacaatcggcttcttcaattc |
35841497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 83 - 282
Target Start/End: Original strand, 13313413 - 13313612
Alignment:
| Q |
83 |
tcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctg |
182 |
Q |
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|||||||||||||| |||||||| |||||||| |||||||||||||| ||| || |||||||||| | ||||||| ||| |||||| | ||||||||| |
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| T |
13313413 |
tcgaatcaaatcatagtcaaaattgcaatccttgatgagaattctacggataacaatactatccaatttctcaaaaacactgttctcaaactcgactctg |
13313512 |
T |
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| Q |
183 |
tataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggcttcttca |
282 |
Q |
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|||||||||||||| | ||||| ||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
13313513 |
tataaaccgattttatgactcacaacttttccaatttgaacaacgaattctgaaaactctttcaaaacgtatcgtccaatcaatacaatcggcttattca |
13313612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 57 - 282
Target Start/End: Complemental strand, 13314307 - 13314082
Alignment:
| Q |
57 |
aacgattgatccaattcattcttccgtcgaatcaaatcatcgtcaaaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaa |
156 |
Q |
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||||||||||||||||||||||| |||||||| ||||| | ||||||| ||||||||| ||||||||| || ||||| || |||||||||| ||||||| |
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| T |
13314307 |
aacgattgatccaattcattctttcgtcgaattaaatcttaatcaaaattgcaatcctcgatgagaattataggaataacattactatccaattcctcaa |
13314208 |
T |
|
| Q |
157 |
aatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcg |
256 |
Q |
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|| || | ||||| | ||||||||||||||||| ||||| ||| ||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| |
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| T |
13314207 |
aaacatcattctcaaactcgactctgtataaaccaattttataaatcaaaactttttcgatttggacaacgctttttgaaaactctttcaaaatctatcg |
13314108 |
T |
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| Q |
257 |
tccaatcaatacaataggcttcttca |
282 |
Q |
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||||||||| ||||| |||||||||| |
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| T |
13314107 |
tccaatcaacacaatcggcttcttca |
13314082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 143 - 271
Target Start/End: Original strand, 13300924 - 13301051
Alignment:
| Q |
143 |
atccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactct |
242 |
Q |
| |
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|||||| ||||||||| |||||||||| | |||||| |||||||| ||||||||||||||| |||||||| ||||||| ||| || |||| |||||||| |
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| T |
13300924 |
atccaattcctcaaaaacaccgttctcaaactcgactttgtataaatcgattttgtaactcataacttttctgatttgaacaatgctttct-aaaactct |
13301022 |
T |
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| Q |
243 |
ttcaaaacgtatcgtccaatcaatacaat |
271 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
13301023 |
ttcaaaacgtatcgtccaatcaatacaat |
13301051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 13305675 - 13305578
Alignment:
| Q |
179 |
tctgtataaaccgattttgtaactcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaataggct |
276 |
Q |
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||||| |||||||||||| ||||||| |||||||| ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
13305675 |
tctgtgtaaaccgattttataactcacaacttttctgatttgaacaacgctttctgaaaactctttcaaaacatatcggccaatcaatacaatcggct |
13305578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 13305377 - 13305536
Alignment:
| Q |
102 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttctcgtagtcgactctgtataaaccgattttgtaac |
201 |
Q |
| |
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|||| ||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| | || ||||| ||||||| ||||| |||| |
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| T |
13305377 |
aaattgcaatcctc--tgagaattctacgaatagcactactatcaatttcctcaaaaacaccgttctcaaactc--ctctgcataaaccaattttataac |
13305472 |
T |
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| Q |
202 |
tcaaaacttttccgatttgatcaacgcgttctgaaaactctttcaaaacgtatcgtccaatcaatacaat |
271 |
Q |
| |
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||| || ||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
13305473 |
tcataatttttccgatttga------ctttctgaaaactctttcaaaacacatcgtccaaccaatacaat |
13305536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 13305739 - 13305673
Alignment:
| Q |
102 |
aaatcgcaatcctcaatgagaattctacgaatagcactactatccaaatcctcaaaatcaccgttct |
168 |
Q |
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|||| ||||| ||| |||| |||| ||||||| ||||||||||||| ||||||||| ||||||||| |
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| T |
13305739 |
aaattgcaatactcgatgataatttgacgaataacactactatccaattcctcaaaaacaccgttct |
13305673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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