View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_2 (Length: 678)
Name: NF18347_high_2
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 1 - 661
Target Start/End: Complemental strand, 10598793 - 10598133
Alignment:
| Q |
1 |
cttttactctcccagtcaaatttgatattacacttatctgttcattcccagcttcaagcaactccttcatcagcttccttagcttctcattctcttccag |
100 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598793 |
cttttactctcccagtcaaagttgatattacacttatctgttcattcccagcttcaagcaactccttcatcagcttccttagcttctcattctcttccag |
10598694 |
T |
|
| Q |
101 |
taatctcatgtcaccattcaaatctgcagatactttcgtttttataccggttggttctctgtcagcagtgtcttgaacatcagcttttgttgcttgctgt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
10598693 |
taatctcatgtcaccattcaaatctgcagatactttcgtttttgtaccggttggttctctgtcagcagtgtcttgaacatcagcttttgtttcttgctgt |
10598594 |
T |
|
| Q |
201 |
gcaagattttcttctgattccttttcattcatcactatgatatctagatcatttgcttcttgattcccatgatcagaaatttcaagaggtggtaacttag |
300 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598593 |
gcaagcttttcttctggttccttttcattcatcattatgatatctagatcattcgcttcttgattcccatgatcagaaatttcaagaggtggtaacttag |
10598494 |
T |
|
| Q |
301 |
agtcaattccaattcctgattcttctgtgtctattggtgtatctgctatgtgtccatcatcttctttctggaactcaatcttcacccaaccatctgattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
10598493 |
agtcaattccaattcctgattcttctgtgtctattggtgtatctgctatgtgtccatcatcttctttctggaactcaatctttacccaaccatctgattc |
10598394 |
T |
|
| Q |
401 |
ctcactagacttaacatcttctttttcttcgacccgtggttgctctaattgaatatcttttgcatcatgtttagatatttctacttcaaatttctccgga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598393 |
ctcactagacttaacatcttctttttcttcgacccgtggttgctctaattgagtatcttttgcatcatgtttagatatttctacttcaaatttctccgga |
10598294 |
T |
|
| Q |
501 |
tccttgtcaagcagtcctaccgggagttctttaatgaatacctcatttccagcttgtacttcattttcagaggtattagtctcttcagatgtagccgtgt |
600 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
10598293 |
tcctcgacaagcagtcctaccgggagttctttaatgaatacctcatttccagcttgtacttcattttcagaggtattagtctcttcagatgtagctgtgt |
10598194 |
T |
|
| Q |
601 |
cttcatcgagcactccgactggaagttcttcaatgaatacctcatttccggcttgtacttc |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10598193 |
cttcatcgagcactccgactggaagttcttcaatgaatacctcatttccggcttgtacttc |
10598133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 525 - 661
Target Start/End: Complemental strand, 10598170 - 10598034
Alignment:
| Q |
525 |
agttctttaatgaatacctcatttccagcttgtacttcattttcagaggtattagtctcttcagatgtagccgtgtcttcatcgagcactccgactggaa |
624 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||| | ||||||||||| ||||||| |||| ||||||| ||||||||||||||||||||||| | |
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| T |
10598170 |
agttcttcaatgaatacctcatttccggcttgtacttcagtctcagaggtatttgtctctttagatatagccgtctcttcatcgagcactccgactggga |
10598071 |
T |
|
| Q |
625 |
gttcttcaatgaatacctcatttccggcttgtacttc |
661 |
Q |
| |
|
||||||||||||||||||| ||| | || |||||||| |
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| T |
10598070 |
gttcttcaatgaatacctcgttttcagcatgtacttc |
10598034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 625
Target Start/End: Complemental strand, 10598074 - 10597962
Alignment:
| Q |
522 |
gggagttctttaatgaatacctcatttccagcttgtacttcatttt---------cagaggtattagtctcttcagatgtagccgtgtcttcatcgagca |
612 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| ||||||||| ||| |||| ||||||||| ||||| ||||||||||||||||||| |||| |
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| T |
10598074 |
gggagttcttcaatgaatacctcgttttcagcatgtacttcactttgtacatttccagatgtattagtcccttcaaatgtagccgtgtcttcatcaagca |
10597975 |
T |
|
| Q |
613 |
ctccgactggaag |
625 |
Q |
| |
|
|||| |||||||| |
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|
| T |
10597974 |
ctccaactggaag |
10597962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 1e-43; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 531 - 661
Target Start/End: Complemental strand, 53388892 - 53388762
Alignment:
| Q |
531 |
ttaatgaatacctcatttccagcttgtacttcattttcagaggtattagtctcttcagatgtagccgtgtcttcatcgagcactccgactggaagttctt |
630 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||||||| |
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| T |
53388892 |
ttaatgagtacctcatttctggcttgtacgtcatttacagaggtattagtcttttcagatgtagttgtgtcttcatcgagcactccaactgggagttctt |
53388793 |
T |
|
| Q |
631 |
caatgaatacctcatttccggcttgtacttc |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
53388792 |
caatgaatacctcatttccggcttgtacttc |
53388762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 522 - 643
Target Start/End: Complemental strand, 53388802 - 53388681
Alignment:
| Q |
522 |
gggagttctttaatgaatacctcatttccagcttgtacttcattttcagaggtattagtctcttcagatgtagccgtgtcttcatcgagcactccgactg |
621 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||| ||||| || | |
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| T |
53388802 |
gggagttcttcaatgaatacctcatttccggcttgtacttcagtctcagatgtattagtctcttcagatgtagccttgtcttcatcgattactccaacgg |
53388703 |
T |
|
| Q |
622 |
gaagttcttcaatgaatacctc |
643 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
53388702 |
gaagttcttcaatgaatacctc |
53388681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 562 - 625
Target Start/End: Complemental strand, 53388654 - 53388591
Alignment:
| Q |
562 |
cattttcagaggtattagtctcttcagatgtagccgtgtcttcatcgagcactccgactggaag |
625 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
53388654 |
cattttcagatgtattagtctcttcaaatgtagccgtgtattcatcgagcactccgactggaag |
53388591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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