View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_30 (Length: 228)
Name: NF18347_high_30
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_30 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 4797010 - 4796778
Alignment:
| Q |
6 |
aaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactccatcatttccattatttctatcaacaagagagttaacattacaaa |
105 |
Q |
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| T |
4797010 |
aaggagggagacagaactcaaaagagagtgtgtagcatatatgataacataactccatcatttccattatttctatgaacaagagagt-aacattacaaa |
4796912 |
T |
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| Q |
106 |
tcaaatattaacacataaa-----------cgtaaattgagtcatcaacacaaattttagttgtcgttgagtcatcgtatccgacattgaattttctcaa |
194 |
Q |
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| T |
4796911 |
tcaaacattaacacataaaagaaaagaaaacgtaaattgagtcatcaacacaaattttagttgtcgttgagtcatcgtatccaacattgaattttctcaa |
4796812 |
T |
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| Q |
195 |
ttcatattctttgtgcaaaaagaaactcgatggc |
228 |
Q |
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| T |
4796811 |
ttcatattctttgtgcaaaaagaaactcgatggc |
4796778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 4788840 - 4788913
Alignment:
| Q |
6 |
aaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactccatcatttccattatttct |
79 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4788840 |
aaggagggagacagaactcaaaacagagtgtgtagcatatatgataacataactccatcatttccattgtttct |
4788913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 4791485 - 4791419
Alignment:
| Q |
6 |
aaggagggaggcagaactcaaaacagagtgtgtagcatatatgataacataactccatcatttccat |
72 |
Q |
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| T |
4791485 |
aaggagggagacagaactcaaaacagagtgtgtagcatatatgataacacaactccatcatttccat |
4791419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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