View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_high_7 (Length: 522)
Name: NF18347_high_7
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Complemental strand, 37144102 - 37143614
Alignment:
| Q |
19 |
aagctttggggtataataacaagtagtttagaatt------ctatattcaatatttaataatgttaaaaatagctctatgtcaatctttaggatataata |
112 |
Q |
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| T |
37144102 |
aagctttggggtataataacaggtagtttagaattagaattctatattcaatatttaataatgttaaaaatagctctatgtcaatctttaggatataata |
37144003 |
T |
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| Q |
113 |
acaggtagcttagaatttgtaagttcagcatcttaagcttttatttttattttggatgttatgctttagttgttaaattgatattacaaactactgtacg |
212 |
Q |
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| T |
37144002 |
acaggtagcttagaatttgtaagttcagcatcttaagcttttatttttattttggatgttatgctttagttgttaaattgatattacaaactaatgtacg |
37143903 |
T |
|
| Q |
213 |
tgggacatcctaattgcacataaccaacaagtgaaaacctatacgagaatttgtagaattattatcaacagcaacaaccaaatttccaattaagtagttt |
312 |
Q |
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| T |
37143902 |
tgggacatcctaattgcacataaccaacaagtgaaaacctatacgagaatttgtagaattattatcaacagcaacaaccaaatttccaattaagtagttt |
37143803 |
T |
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| Q |
313 |
ctattctattcatgctactatatactattatttctttccagaaacaaaattacaggattttcttcaattcttttataaataagcaagttatgtgaggaga |
412 |
Q |
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| T |
37143802 |
ctattctattcatgctactatatactattatttctttccagaaacaaaattacaggattttcttcaattcttttataaataagcaagttatgtgaggaga |
37143703 |
T |
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| Q |
413 |
aaactattaaaaactaaaaatttcattacaacttaaaattgttgtaaaagttcgannnnnnnnncttcaagtggagtagagtgggttttgaaagtg |
508 |
Q |
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| T |
37143702 |
aaactatta-------aaaatttcattacaacttaaaattgttgtaaaagttcgatttttttttcttcaagtggagtagagtgggttttgaaagtg |
37143614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 37153958 - 37153759
Alignment:
| Q |
238 |
aacaagtgaaaacctatacgagaatttgtagaattattatcaacagcaac-aaccaaatttccaattaagt------agtttctattctattcatgctac |
330 |
Q |
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| T |
37153958 |
aacaagtgaaaaccaaca-gagaatttgtagaattgttatcaacaacaacaaacaaaatttccaattaagtagtatgagtatccattcaattcatactac |
37153860 |
T |
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| Q |
331 |
tatatactattatttctttccagaaacaaaattacaggattttcttcaattcttttataaataagcaagttatgtgaggagaaaactattaaaaactaaa |
430 |
Q |
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| T |
37153859 |
catatactattatttcttt--taaaaaaaaatta-agaattttcttccat--ttttttaaataaacaacttgtgtgaggagaaaagtattaaacaataaa |
37153765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 238 - 436
Target Start/End: Complemental strand, 37199313 - 37199114
Alignment:
| Q |
238 |
aacaagtgaaaacctatacgagaatttgtagaattattatcaacagcaac-aaccaaatttccaattaagt------agtttctattctattcatgctac |
330 |
Q |
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| T |
37199313 |
aacaagtgaaaaccaaca-gagaatttgtagaattgttatcaacaacaacaaacaaaatttccaattaagtagtatgagtatccattcaattcatactac |
37199215 |
T |
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| Q |
331 |
tatatactattatttctttccagaaacaaaattacaggattttcttcaattcttttataaataagcaagttatgtgaggagaaaactattaaaaactaaa |
430 |
Q |
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| T |
37199214 |
catatactattatttcttt--taaaaaaaaatta-agaattttcttccat--ttttttaaataaacaacttgtgtgaggagaaaagtattaaacaataaa |
37199120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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