View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_1 (Length: 775)
Name: NF18347_low_1
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_1 |
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| [»] scaffold0225 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 339 - 694
Target Start/End: Complemental strand, 18917916 - 18917561
Alignment:
| Q |
339 |
accacttccttatgacgtttagcccactccaaactccacggaccagccgataccgagtgcactcttcccggaggacaggaggaagtacgctgcgccttct |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
18917916 |
accacttccttatgacgtttagcccactccaaactccacggaccagccgaaaccgagtgcactcttcccggaggacaggaggaagtgcgctgcaccttct |
18917817 |
T |
|
| Q |
439 |
tattcacaccacccaaggaatggctcttaaaaatcggagccttgctggtatcacataaattgatgttgcgaactgcctgaagatcactagcgtcgtcact |
538 |
Q |
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||||||| ||||||||||||||||| |||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| | |||||| |||| ||||| |
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| T |
18917816 |
tattcacgccacccaaggaatggcttttaaaattcggagccttgctgatatcacataaactgatgttgcgagctgcctgatgttcactaacgtcttcact |
18917717 |
T |
|
| Q |
539 |
tggtttaggatccgtaaaagaaaccgtagctgcacacgaccccttcttaacgtcaacgtcgagtgaaactgactgaagcaaagagtttaccttgtaaggc |
638 |
Q |
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|||||| || |||||||||||||||| ||||||||||| ||||||| | || ||| | ||||||| ||||| || || |||||| ||| |||||| ||| |
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| T |
18917716 |
tggttttggttccgtaaaagaaaccgcagctgcacacggccccttcgtcacatcagcctcgagtggaactgtctcaaacaaagaattttccttgttcggc |
18917617 |
T |
|
| Q |
639 |
gaagcatgagaagccttagcgacttgctgctccttcaaccactcctccgataaatt |
694 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18917616 |
gaagcatgagaagccttagcgacttgctgctccttcaaccactcctccgataaatt |
18917561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 308
Target Start/End: Complemental strand, 18918214 - 18917913
Alignment:
| Q |
7 |
ggacatcatcagacaatgtctgtttatctccctgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatc |
106 |
Q |
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|||||||||||||||| |||| ||||||||| ||||| | |||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
18918214 |
ggacatcatcagacaaagtctttttatctccatgaagtgtcaaccagtttgtctagtcattattaacagaaatttgagagccattaacagaagagctatc |
18918115 |
T |
|
| Q |
107 |
attagaaattaccttatcaaaggaagaatccgaaaccaccttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaa |
206 |
Q |
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||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
18918114 |
attagaaattaccttatcattggaaaaatccgaaaccaccttacgtcgcctagacgtcttacgcaaagcacgtaaaactttctttcgatcttcttccgaa |
18918015 |
T |
|
| Q |
207 |
agccttgcaatacgcttcaatttcacagcacaatgtcgaatatggccaactcccttcctacgtttgctacgacggtgactagaggtattgaaattattac |
306 |
Q |
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|||||||||||||||||||| || ||||||||||| ||||| || ||| | |||||||||||||| |||||| |||||| |||||| ||||||| |||| |
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| T |
18918014 |
agccttgcaatacgcttcaacttgacagcacaatggcgaatctgaccagcacccttcctacgtttactacgatggtgaccggaggtagtgaaatttttac |
18917915 |
T |
|
| Q |
307 |
ca |
308 |
Q |
| |
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|| |
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|
| T |
18917914 |
ca |
18917913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 39 - 226
Target Start/End: Complemental strand, 33096150 - 33095963
Alignment:
| Q |
39 |
tgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccg |
138 |
Q |
| |
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||||| ||||||||||| |||| |||||||||||||| || || |||||||||||| || ||||||| ||| ||||||||||| ||| | | ||| |
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| T |
33096150 |
tgaagagccaaccaattcatccagtcattattaacagacgcatgtgaaccattaacagaaaagttatcattggaatttaccttatcattggatgtacccg |
33096051 |
T |
|
| Q |
139 |
aaaccaccttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaa |
226 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||| || | |||||| ||||||||||| |
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| T |
33096050 |
gaaccaccttacgtcgcctatgagttttacgcaaagcacgtaaaacttgctttcgatcttcttctgataaccttgctatacgcttcaa |
33095963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 22530244 - 22530064
Alignment:
| Q |
46 |
ccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccgaaaccac |
145 |
Q |
| |
|
|||||||||||| ||| || ||||| | |||| |||||| ||| ||||||| ||||||||||| ||||||||||||| | || ||||| ||||| |
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| T |
22530244 |
ccaaccaatttgaccagtcgttattgagagaagattgagaaccaataacagaggagctatcattcaaaattaccttatctacatgagtctccgacaccac |
22530145 |
T |
|
| Q |
146 |
cttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaa |
226 |
Q |
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||| ||||||| ||||||||||| ||||||||||||||||| || ||| | ||||||||||| |||||||||||||| |
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| T |
22530144 |
cttttgtcgccttcttgtcttacgcaatgcacgtaaaacttccttacggtctccctcggaaagcctcgcaatacgcttcaa |
22530064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 46 - 226
Target Start/End: Original strand, 29549417 - 29549597
Alignment:
| Q |
46 |
ccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccgaaaccac |
145 |
Q |
| |
|
|||||||||| | ||| |||||||||| ||| |||||| ||| ||||| | ||||||||||| ||||||||||||| || || ||||| ||||| |
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| T |
29549417 |
ccaaccaattcgaccagtcattattaatagatgattgagaaccaataacatatgagctatcattcaaaattaccttatctaaatgagtctccgacaccac |
29549516 |
T |
|
| Q |
146 |
cttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaa |
226 |
Q |
| |
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||| ||||||| ||||||||||| ||||||||||||||||| || ||| | ||||| ||||| |||||||||||||| |
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| T |
29549517 |
cttttgtcgccttctcgtcttacgcaatgcacgtaaaacttccttacggtctccctcggatagcctcgcaatacgcttcaa |
29549597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0225 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0225
Description:
Target: scaffold0225; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 39 - 229
Target Start/End: Complemental strand, 2772 - 2582
Alignment:
| Q |
39 |
tgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccg |
138 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||| | ||| |||||||| | ||||| ||| |
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| T |
2772 |
tgaagagccaaccaattcatccagtcattattaacagacgactgagatccattaacagaagaaatatcaatggaatttaccttaactttggaagtgcccg |
2673 |
T |
|
| Q |
139 |
aaaccaccttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaattt |
229 |
Q |
| |
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| ||||||||||| |||||| || |||||||| ||||||||||||| ||| ||||| || || | | ||| ||||||||||||||||| |
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| T |
2672 |
acaccaccttacgacgcctacgagatttacgcaatgcacgtaaaacttgcttacgatcctcctccaacaacctggcaatacgcttcaattt |
2582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 24733980 - 24733797
Alignment:
| Q |
46 |
ccaaccaatttgtccaatcattattaacagaaatttgagatccattaacagaagagctatcattagaaattaccttatcaaaggaagaatccgaaaccac |
145 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || || || ||||| ||||| |||||||| ||||| ||||||| ||| || ||||| ||| |
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| T |
24733980 |
ccaaccaattcatccaatcattattaacagatgactgcgaaccgttaactgaagaactatcattcgaaatctccttatccttagaacaaaccgaatgcac |
24733881 |
T |
|
| Q |
146 |
cttacgtcgcctagaagtcttacgcaaagcacgtaaaacttcctttcgatcttcttcggaaagccttgcaatacgcttcaattt |
229 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||| || ||||| || ||||| | |||||||||||||||||| |
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| T |
24733880 |
cttacgacgcctattcgtcttacgcaaagcacgtaaaacttctttacgatcctcctcggataattgtgcaatacgcttcaattt |
24733797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 16541590 - 16541528
Alignment:
| Q |
27 |
tgtttatctccctgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatcca |
89 |
Q |
| |
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||||||| || ||||||| ||||| | || ||||||||||||||||||||| |||||||||| |
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|
| T |
16541590 |
tgtttatttcactgaagcaccaactagttggtccaatcattattaacagaagattgagatcca |
16541528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 16624072 - 16624134
Alignment:
| Q |
27 |
tgtttatctccctgaagcgccaaccaatttgtccaatcattattaacagaaatttgagatcca |
89 |
Q |
| |
|
||||||| || ||||||| ||||| | || ||||||||||||||||||||| |||||||||| |
|
|
| T |
16624072 |
tgtttatttcactgaagcaccaactagttggtccaatcattattaacagaagattgagatcca |
16624134 |
T |
|
Back To:
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