View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18347_low_14 (Length: 338)
Name: NF18347_low_14
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 36887274 - 36886952
Alignment:
| Q |
1 |
ccctgagatcagaatgatatttataatttgtatacgtgttctatgtcaaaatgcagaaacattcaagggttagtcctcactgggagtctatgcaggcttt |
100 |
Q |
| |
|
|||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
36887274 |
ccctaagatcagaatgatattgataattggtatccgtgttctatgtcaaaatgcagaaacattcaagggttagacctcactgggagtctatgcaggcttt |
36887175 |
T |
|
| Q |
101 |
ataatctccgaaatttgaaacagctgtgagtgtttttgattttgcaaggcattagtattagattcttatatcaggatatgtgaatttcaagttatgctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36887174 |
ataatctccgaaatttgaaacagctgtgagtgtttttgattttgcaaggcattagtattagattcttatatcaggatatgtgaatttcaagttatgctat |
36887075 |
T |
|
| Q |
201 |
taattaacttgtttccatatttttggtttttgtagggatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacata |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36887074 |
taattaacttgtttccatatttttggtttttgtagggatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacata |
36886975 |
T |
|
| Q |
301 |
tgtaaggcaactgttcttctcat |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36886974 |
tgtaaggcaactgttcttctcat |
36886952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 22557219 - 22557140
Alignment:
| Q |
237 |
gatgtcagttctaataacatagtgggcgaaatgccgtttggtttaccccccaatgtcacacatatgtaaggcaactgttc |
316 |
Q |
| |
|
||||||||||| || | |||| |||| ||||| || | ||| ||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
22557219 |
gatgtcagttccaacagcataatgggtgaaattccatatggattaccccccaatgccacacatatgtaagcctactgttc |
22557140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University