View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18347_low_17 (Length: 317)

Name: NF18347_low_17
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18347_low_17
NF18347_low_17
[»] chr3 (2 HSPs)
chr3 (14-311)||(36743956-36744258)
chr3 (42-74)||(35722340-35722372)
[»] chr8 (9 HSPs)
chr8 (14-79)||(6392095-6392160)
chr8 (14-79)||(6364472-6364537)
chr8 (14-79)||(6411259-6411324)
chr8 (36-79)||(6264930-6264973)
chr8 (34-79)||(7460671-7460716)
chr8 (14-76)||(6290510-6290572)
chr8 (51-89)||(6458252-6458290)
chr8 (34-79)||(6353599-6353644)
chr8 (34-79)||(6425289-6425334)
[»] chr2 (1 HSPs)
chr2 (36-85)||(42694385-42694434)
[»] chr1 (1 HSPs)
chr1 (66-188)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 311
Target Start/End: Original strand, 36743956 - 36744258
Alignment:
Q  14 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743956 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccg 36744055  T
Q  114 attctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgt 213  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36744056 attctcggaggttcttctaaatttccctatcctcgtaggggaagaacctgcagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgt 36744155  T
Q  214 taattgctctcaact-----ttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgattcattaattcacaggttc 308  Q
    |||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||    
T  36744156 taattgctctcaactttttcttttcttagtaatatataattgaaactttttactaatgaatatatattatttatatgatgattcattaatttacagattc 36744255  T
Q  309 tgc 311  Q
    |||    
T  36744256 tgc 36744258  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  42 gacagaatctatgattatgatgtttacaatgat 74  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 6392160 - 6392095
Alignment:
Q  14 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    ||||||||| | | ||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  6392160 agatggaactggagagcgtaaggaatgggacagaatatatgattatgatgtctacaatgatttggg 6392095  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 6364537 - 6364472
Alignment:
Q  14 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    ||||||||| | | ||||| |||||||||| ||||| |||||||||||||| ||||||||||||||    
T  6364537 agatggaactggagagcgtaaggaatgggaaagaatatatgattatgatgtctacaatgatttggg 6364472  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 6411324 - 6411259
Alignment:
Q  14 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    ||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411324 agatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 79
Target Start/End: Complemental strand, 6264973 - 6264930
Alignment:
Q  36 gaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    |||||||||||| | |||||||||||||||||||||||||||||    
T  6264973 gaatgggacagagtttatgattatgatgtttacaatgatttggg 6264930  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 7460716 - 7460671
Alignment:
Q  34 aggaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||    
T  7460716 aggaatgggacagaatatatgattatgatgtctacaatgacttggg 7460671  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 6290572 - 6290510
Alignment:
Q  14 agatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgattt 76  Q
    ||||||||||| | ||||  |||||||||| ||||| |||||||| ||||| |||||||||||    
T  6290572 agatggaacaggagagcgcaaggaatgggaaagaatatatgattacgatgtctacaatgattt 6290510  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  51 tatgattatgatgtttacaatgatttgggaaatccagat 89  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 6353644 - 6353599
Alignment:
Q  34 aggaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    |||||||||| ||||| |||||||| ||||| ||||||||||||||    
T  6353644 aggaatgggaaagaatatatgattacgatgtctacaatgatttggg 6353599  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 6425334 - 6425289
Alignment:
Q  34 aggaatgggacagaatctatgattatgatgtttacaatgatttggg 79  Q
    |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425334 aggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Complemental strand, 42694434 - 42694385
Alignment:
Q  36 gaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 85  Q
    |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694434 gaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  66 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 165  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  166 gaaaaccgaccaaaacaggttag 188  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

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