View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_18 (Length: 292)
Name: NF18347_low_18
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 37317252 - 37317522
Alignment:
| Q |
6 |
agaagcataggggtactgcaacaagaagtttggaagtaaggaattgaagatatataaaaaatgtacaatacatttctttacattaacttatctaattttg |
105 |
Q |
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| T |
37317252 |
agaagaataggggtactgcaacaagaagtttggaagtaaggaattgaagatatataaaaaatgtacaatacatttctttacattaacttatctaattttg |
37317351 |
T |
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| Q |
106 |
gtaaaaagaagattccaattagacattgatagtctaacagcttatgatgtgaatattttatttttgctttcaaatgtacataagataagattctaaatat |
205 |
Q |
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| T |
37317352 |
gtaaaaagaagattccaattagacattgatagtctaacagcttatgatgtgaatattttatttttgctttcaaatgtacataagataagattctaaatat |
37317451 |
T |
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| Q |
206 |
atacatcttagcctatctagctagtatacaaatatgatgactaattaatctataaggcattaggaaaatac |
276 |
Q |
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| T |
37317452 |
atacatcttagcctatctagctagtatacaaatatgatgactaattaatctataaggcattaggaaaatac |
37317522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 107 - 178
Target Start/End: Original strand, 37242185 - 37242256
Alignment:
| Q |
107 |
taaaaagaagattccaattagacattgatagtctaacagcttatgatgtgaatattttatttttgctttcaa |
178 |
Q |
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| T |
37242185 |
taaagagaagattccaattagacattaatagttttacaggtaatggggtgaatattttagttttgctttcaa |
37242256 |
T |
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