View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_21 (Length: 283)
Name: NF18347_low_21
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 8460425 - 8460212
Alignment:
| Q |
1 |
ccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatgtgtagtagtctcttgtaaaccccatcctctaacattaattagt |
100 |
Q |
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| T |
8460425 |
ccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatttaaaaataaatgtgtagtagtcttttgtaaaccccatcctctaacattaattagt |
8460326 |
T |
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| Q |
101 |
tgattgaatgtctactgtgtaattgatcttactacagttattaattattacttcaatgagtttgtctttctcttgataatagcaatttgtagaaggtaac |
200 |
Q |
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| T |
8460325 |
tgattgaatgtctattgtgtaattgatcttactacagttattaattattacttgaatgagtttgtctttctcttgataatagcaatttgtagaaggtaac |
8460226 |
T |
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| Q |
201 |
taatgtcgttacac |
214 |
Q |
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| T |
8460225 |
taatgtcgttacac |
8460212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 8466577 - 8466479
Alignment:
| Q |
116 |
tgtgtaattgatcttactacagttattaattattacttcaatgagtttgtctttctcttgataatagcaatttgtagaaggtaactaatgtcgttacac |
214 |
Q |
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| T |
8466577 |
tgtgtaattgatcttactagagttattaattattactgcaatgagtttgtctttctcctgataatagcaatttgtagaaggtaactaatgtcgttacac |
8466479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 16423379 - 16423462
Alignment:
| Q |
8 |
gaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatgtgtagtagtctcttgtaaaccccatcctctaaca |
91 |
Q |
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| T |
16423379 |
gaaacagaaacccacagattgagaaatgtgtcacaatttaaaaataaatgtgtagcattctcttgtaaaccgcaccctccaaca |
16423462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4637285 - 4637229
Alignment:
| Q |
1 |
ccactgcgaaacagaaacccacagattgcgaaatgtgtcgcaatataaaaataaatg |
57 |
Q |
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| T |
4637285 |
ccactgcgaaacaaaaacccacagattgccaaaagtggcgcaatgtaaaaataaatg |
4637229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 28407824 - 28407776
Alignment:
| Q |
156 |
atgagtttgtctttctcttgataatagcaatttgtagaaggtaactaat |
204 |
Q |
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| T |
28407824 |
atgagtttgtgtttatcttgataatagtaatttgtagaaggtaactaat |
28407776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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