View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18347_low_26 (Length: 253)

Name: NF18347_low_26
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18347_low_26
NF18347_low_26
[»] chr3 (10 HSPs)
chr3 (115-224)||(19647621-19647730)
chr3 (115-225)||(7944218-7944328)
chr3 (115-225)||(40916566-40916675)
chr3 (119-217)||(26251277-26251374)
chr3 (1-48)||(40916742-40916789)
chr3 (128-218)||(34020547-34020637)
chr3 (172-218)||(45525835-45525881)
chr3 (4-48)||(19647801-19647845)
chr3 (1-48)||(7944393-7944440)
chr3 (119-217)||(49015471-49015568)
[»] chr5 (11 HSPs)
chr5 (115-223)||(14136398-14136506)
chr5 (115-224)||(11782160-11782269)
chr5 (115-224)||(27514203-27514311)
chr5 (118-215)||(1463734-1463831)
chr5 (115-224)||(38695021-38695131)
chr5 (115-204)||(40323389-40323478)
chr5 (4-48)||(27514092-27514136)
chr5 (119-200)||(32772381-32772461)
chr5 (4-48)||(38694909-38694953)
chr5 (6-48)||(11782047-11782089)
chr5 (7-48)||(14136291-14136331)
[»] chr1 (13 HSPs)
chr1 (115-224)||(38863428-38863537)
chr1 (115-224)||(37285456-37285564)
chr1 (119-225)||(26733426-26733531)
chr1 (115-217)||(14998509-14998610)
chr1 (145-216)||(47215499-47215570)
chr1 (128-218)||(50150066-50150156)
chr1 (119-218)||(43011612-43011711)
chr1 (119-218)||(46879059-46879157)
chr1 (119-218)||(29922445-29922543)
chr1 (171-217)||(5056041-5056087)
chr1 (120-217)||(6850152-6850248)
chr1 (4-48)||(26733308-26733352)
chr1 (7-48)||(37285633-37285674)
[»] chr8 (10 HSPs)
chr8 (115-223)||(31664815-31664923)
chr8 (122-218)||(42146062-42146158)
chr8 (115-221)||(27562591-27562698)
chr8 (115-222)||(35176339-35176446)
chr8 (4-48)||(31664716-31664760)
chr8 (115-218)||(30152399-30152502)
chr8 (119-217)||(9232826-9232923)
chr8 (6-48)||(42146234-42146276)
chr8 (4-48)||(27562480-27562524)
chr8 (4-48)||(35176520-35176564)
[»] chr6 (8 HSPs)
chr6 (115-216)||(18058399-18058500)
chr6 (115-224)||(30452797-30452906)
chr6 (115-218)||(7695181-7695284)
chr6 (119-217)||(27335454-27335551)
chr6 (119-217)||(27396194-27396291)
chr6 (4-48)||(18058567-18058611)
chr6 (4-48)||(30452682-30452726)
chr6 (140-218)||(25049495-25049573)
[»] chr4 (17 HSPs)
chr4 (115-224)||(33748232-33748341)
chr4 (115-226)||(42057894-42058005)
chr4 (115-224)||(54453862-54453971)
chr4 (119-216)||(48513460-48513556)
chr4 (119-217)||(31416525-31416622)
chr4 (119-199)||(37385828-37385907)
chr4 (4-48)||(42057777-42057821)
chr4 (119-215)||(52488655-52488750)
chr4 (115-154)||(1605942-1605981)
chr4 (119-218)||(42478213-42478311)
chr4 (6-48)||(33748121-33748163)
chr4 (119-215)||(29820243-29820338)
chr4 (170-218)||(55862514-55862561)
chr4 (170-217)||(34456143-34456190)
chr4 (120-194)||(49251394-49251468)
chr4 (128-197)||(38582173-38582242)
chr4 (4-36)||(54454084-54454116)
[»] scaffold0060 (2 HSPs)
scaffold0060 (115-225)||(60556-60666)
scaffold0060 (4-48)||(60734-60778)
[»] chr7 (6 HSPs)
chr7 (115-225)||(27923264-27923373)
chr7 (115-224)||(42062089-42062198)
chr7 (119-217)||(42010691-42010788)
chr7 (4-48)||(42062265-42062309)
chr7 (4-48)||(27923148-27923192)
chr7 (115-163)||(38231098-38231146)
[»] chr2 (10 HSPs)
chr2 (115-225)||(7000443-7000552)
chr2 (122-208)||(42481211-42481296)
chr2 (4-48)||(42481390-42481434)
chr2 (119-218)||(14360106-14360204)
chr2 (115-218)||(11761899-11762000)
chr2 (6-48)||(4106013-4106055)
chr2 (4-48)||(7000330-7000374)
chr2 (170-218)||(17033824-17033872)
chr2 (170-218)||(17077554-17077602)
chr2 (170-218)||(17088508-17088556)


Alignment Details
Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 19647730 - 19647621
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19647730 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaatttggtccatcatggaccaatatttttataggttcatttt 19647631  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  19647630 atacttcacc 19647621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 7944328 - 7944218
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7944328 tttgatgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 7944229  T
Q  215 atacttcacct 225  Q
    |||||||||||    
T  7944228 atacttcacct 7944218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 40916675 - 40916566
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||| |||||||||||||| |||||||||| ||||||| ||||||||||| ||||||||||||| ||||  ||  | ||||| ||||||||||| |||||    
T  40916675 tttgatgtttatagaccataataaaatttgatgggttcttatgatctaatggtacaaaaaattgatccacaataaaacaata-ttttataggtttatttt 40916577  T
Q  215 atacttcacct 225  Q
    |||||||||||    
T  40916576 atacttcacct 40916566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Original strand, 26251277 - 26251374
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  ||||||||| ||||||||||||||||||| | || |||||||||||||    
T  26251277 gtgtttatagatcatgataaaattttg-gggttcatttaatctaaccgttgaaaaaattgatccatcatggaccaatattctcatgggttcattttata 26251374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 40916789 - 40916742
Alignment:
Q  1 cggtcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||    
T  40916789 cggtcaatacaaagtaccgtaagaaaaagactacttgtattgctaaat 40916742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 34020637 - 34020547
Alignment:
Q  128 gaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||| ||||| |||||||||||||||||||  ||| |||||||||| ||||||||  |  ||||||||||| | | |||||||||||||    
T  34020637 gaccataataaagtttggtgggttcatatgattcaatggtacaaaaaactggtccattttaaaccaatattttcacatgttcattttatac 34020547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 218
Target Start/End: Complemental strand, 45525881 - 45525835
Alignment:
Q  172 aaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||||    
T  45525881 aaaattggtccatgatggaccaatatttttatgggttcattttatac 45525835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 19647845 - 19647801
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||||||  ||||||||||||||||||||||||||||||    
T  19647845 tcaatacaaagtgctgtaagaaaaagactacttgtattgctaaat 19647801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 7944440 - 7944393
Alignment:
Q  1 cggtcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||  ||||| |||||||||||||||||||||||||||||||    
T  7944440 cggtcaatatcaagtgccgtaagaaaaagactacttgtattgctaaat 7944393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 49015568 - 49015471
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | || ||||| | ||||||  ||  |||||||||||||||||| |||||||||| | | || |||||||||||    
T  49015568 gtgtttatagatcatgataaaattttgagg-ttcatttaatctaaccgttgaaaaaattggtccatcatagaccaatattctcagagattcattttata 49015471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 14136398 - 14136506
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14136398 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 14136497  T
Q  215 atacttcac 223  Q
    |||||||||    
T  14136498 atacttcac 14136506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 11782160 - 11782269
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11782160 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 11782259  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  11782260 atacttcacc 11782269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 27514203 - 27514311
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27514203 tttggtgtttatagaccatgataaaatttggtgggttcatatgatcta-tggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 27514301  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  27514302 atacttcacc 27514311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 215
Target Start/End: Original strand, 1463734 - 1463831
Alignment:
Q  118 ggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttta 215  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  1463734 ggtgtttatagatcatgataaaatttggtgggttcatatgatctaatgatatcaaaaattggtccatcatggaccaatatttttataggttcatttta 1463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 38695021 - 38695131
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcat-ggaccaatatttttataggttcattt 213  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||||||| |||||||||||||||| |||||   | ||||||||||||||||||||||    
T  38695021 tttggtgtttataaaccatgataaaatttgataggttcatatgatctaatggtacaaaaaattggtctatcataaaaacaatatttttataggttcattt 38695120  T
Q  214 tatacttcacc 224  Q
    |||||||||||    
T  38695121 tatacttcacc 38695131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 204
Target Start/End: Original strand, 40323389 - 40323478
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttata 204  Q
    |||| ||||||||||||||||||| |||||||| |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||    
T  40323389 tttgatgtttatagaccatgataagatttggtgagttcatataatctaatggtacaaaaaattggtccatcatagaccaatatttttata 40323478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 27514092 - 27514136
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  27514092 tcaatacaaagtgtcgtaagaaaaagactacttgtattactaaat 27514136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 32772381 - 32772461
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttt 200  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  |||||||||||||||||| ||||||||||||    
T  32772381 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattggtccatcatagaccaatatttt 32772461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 38694909 - 38694953
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| ||||||||||||||||||| | |||||||||    
T  38694909 tcaatacaaagtgccgtaagaaaaagactacttatgttgctaaat 38694953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 11782047 - 11782089
Alignment:
Q  6 aatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||||   |||||||||||||||||||||||||||||    
T  11782047 aatacaaagtgcgttaagaaaaagactacttgtattgctaaat 11782089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 14136291 - 14136331
Alignment:
Q  7 atacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  14136291 atacaaagtgccgtaagaaaaa-actacttgtattgctaaat 14136331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 38863537 - 38863428
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38863537 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatagaccaatatttttataggttcatttt 38863438  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  38863437 atacttcacc 38863428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 37285564 - 37285456
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||||||| |||||||||    
T  37285564 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatgataccaaaaattggtccatcatggaccaatatttttata-gttcatttt 37285466  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  37285465 atacttcacc 37285456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 119 - 225
Target Start/End: Original strand, 26733426 - 26733531
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||||||     
T  26733426 gtgtttatagaccatgataaaatttggtgggttcatataatctaatggtac-aaaaattggtccatcatagaccaatatttttataagttcattttatag 26733524  T
Q  219 ttcacct 225  Q
    |||||||    
T  26733525 ttcacct 26733531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 14998610 - 14998509
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    ||||||||||| ||| |||||||| ||||| | |||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14998610 tttggtgtttaaagatcatgataagatttg-taggtttatatgatctaacggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 14998512  T
Q  215 ata 217  Q
    |||    
T  14998511 ata 14998509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 216
Target Start/End: Complemental strand, 47215570 - 47215499
Alignment:
Q  145 gtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 216  Q
    |||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47215570 gtgggttcatattatttaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 47215499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 50150156 - 50150066
Alignment:
Q  128 gaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||| |||| ||||||||||||||||||||||||  |||||||||| ||||||||| | |||||||||||| | |||||||||||||||    
T  50150156 gaccataataagatttggtgggttcatatgatctaacggtacaaaaaactggtccatcttagaccaatattttcacaggttcattttatac 50150066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 43011711 - 43011612
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||||  |||||| ||||  |||||||||||||||||||| ||  |||||||||| ||||||||| | |||||||||||||  |||||||||||||||    
T  43011711 gtgtttaatgaccataataaggtttggtgggttcatatgatccaacggtacaaaaaactggtccatcttagaccaatatttttccaggttcattttatac 43011612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 46879157 - 46879059
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    ||||||||||||||||||||||||| | || ||||||| ||||||   |  |||||||| |||||||||||||||||||||| || ||||||||||||||    
T  46879157 gtgtttatagaccatgataaaatttag-ggattcatataatctaaccattgaaaaaattagtccatcatggaccaatattttcatgggttcattttatac 46879059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 29922445 - 29922543
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||||||||||||||||||||||   |||||||||| ||||||   |  ||||||||||||||||||| ||||||||||  || | ||||||||||||    
T  29922445 gtgtttatagaccatgataaaatttaa-gggttcatataatctaaccattgaaaaaattggtccatcatgaaccaatatttccatggattcattttatac 29922543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 5056041 - 5056087
Alignment:
Q  171 aaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  5056041 aaaaattggtccatcatggaccaatattttcatgggttcattttata 5056087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 6850248 - 6850152
Alignment:
Q  120 tgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    |||||||||| ||||||||||||| | ||| |||| | ||||||  ||  ||||||||| ||||||||||||||||||| | || |||||||||||||    
T  6850248 tgtttatagatcatgataaaattttg-gggctcatctaatctaaccgttgaaaaaattgatccatcatggaccaatattctcatgggttcattttata 6850152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 26733308 - 26733352
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||| |||||| |||||||||||||||||||||||||||||||    
T  26733308 tcaataaaaagtgccgtaagaaaaagactacttgtattgctaaat 26733352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 37285674 - 37285633
Alignment:
Q  7 atacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  37285674 atacaaagtgccgtaagaaaatgactacttgtattgctaaat 37285633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 115 - 223
Target Start/End: Original strand, 31664815 - 31664923
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31664815 tttggtgtttatagaccatgataaaatttggtgagttcatatgatctaatggtacaaaaaattgttccatcatggaccaatatttttataggttcatttt 31664914  T
Q  215 atacttcac 223  Q
    |||||||||    
T  31664915 atacttcac 31664923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 42146158 - 42146062
Alignment:
Q  122 tttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42146158 tttataaaccacgataaaatttggtgggttcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 42146062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 27562591 - 27562698
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtac-aaaaaattggtccatcatggaccaatatttttataggttcattt 213  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  27562591 tttgatgtttatagaccatgataaaatttggtgggttcatatgatctaatggtacaaaaaaattagtccatcatagaccaatatttttataggttcattt 27562690  T
Q  214 tatacttc 221  Q
    ||||||||    
T  27562691 tatacttc 27562698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 35176446 - 35176339
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||| ||||||||||||||||||||| ||||||| ||||||| | | |||||||| ||||||||| |||||||||||||||||||| |||||    
T  35176446 tttggtgtttatggaccatgataaaatttggtggattcatataatctaatgggataaaaaattagtccatcatagaccaatatttttataggttgatttt 35176347  T
Q  215 atacttca 222  Q
    ||||||||    
T  35176346 atacttca 35176339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 31664716 - 31664760
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  31664716 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 31664760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 30152399 - 30152502
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||| ||||||| ||| |||| ||||||| |||| ||||||   |  |||| ||||||||||||||||||||||| || || ||||||||||    
T  30152399 tttggtgtttatggaccatggtaagatttagtgggttgatataatctaaacattgaaaagattggtccatcatggaccaatatcttgatgggttcatttt 30152498  T
Q  215 atac 218  Q
    ||||    
T  30152499 atac 30152502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 9232923 - 9232826
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  ||||||||| ||||||||||| ||||||| | || |||||||||||||    
T  9232923 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattgatccatcatggatcaatattctcatgggttcattttata 9232826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 42146276 - 42146234
Alignment:
Q  6 aatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  42146276 aatacaaagtgtcgtaagaaaaagactacttgcattgctaaat 42146234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 27562480 - 27562524
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||    
T  27562480 tcaatacaaagtgccgtaagaaaaagagtacttgtattgctaaat 27562524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 35176564 - 35176520
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||    
T  35176564 tcaatacaaagtgccgtaagaaaaaaactacttgtattgctaaat 35176520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 18058500 - 18058399
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18058500 tttggtgtttatagaccatgataaaatttggtggattcatatgatctaatggtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 18058401  T
Q  215 at 216  Q
    ||    
T  18058400 at 18058399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 30452797 - 30452906
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||||    
T  30452797 tttggtgtttatagaccatgataaaatttaatgggttcatatgatctaatggtacaaaaaattggtccatcatagaccaatattattataggtttatttt 30452896  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  30452897 atacttcacc 30452906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 218
Target Start/End: Original strand, 7695181 - 7695284
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||| ||||||||||| |||| ||||||| |||||||||||   |  |||| | ||||||||||| ||||||||| || || ||||||||||    
T  7695181 tttggtgtttatggaccatgataagatttagtgggttgatatgatctaagcattgaaaagactggtccatcatcgaccaatatcttgatgggttcatttt 7695280  T
Q  215 atac 218  Q
    ||||    
T  7695281 atac 7695284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 27335551 - 27335454
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||   |  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  27335551 gtgtttatagatcatgataaaattttg-gggttcatctaatctaactattgaaaaaattggtccatcatggaccaatattctcatgggttcattttata 27335454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 27396291 - 27396194
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||   |  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  27396291 gtgtttatagatcatgataaaattttg-gggttcatctaatctaactattgaaaaaattggtccatcatggaccaatattctcatgggttcattttata 27396194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 18058611 - 18058567
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  18058611 tcaatacaaagtgccgtaagaaaaagactacttgtattgctaaat 18058567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 30452682 - 30452726
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  30452682 tcaatacaaagtgtcgtaagaaaaagactacttgtatggctaaat 30452726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 25049573 - 25049495
Alignment:
Q  140 atttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    ||||||||||||||||||||| ||  ||| ||||||||||||||||||  |||||||||||  |  |||||||||||||    
T  25049573 atttggtgggttcatatgatccaacggtagaaaaaattggtccatcataaaccaatattttcgtgcgttcattttatac 25049495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 115 - 224
Target Start/End: Original strand, 33748232 - 33748341
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33748232 tttgatgtttatagaccatgataaaatttgatggattcatatgatctaatggtacaaaaaattggtccatcatgaaccaatatttttataggttcatttt 33748331  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  33748332 atacttcacc 33748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 115 - 226
Target Start/End: Original strand, 42057894 - 42058005
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||    
T  42057894 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtacaaaaaattggtccatcataaaccaatatttttataggttcatttt 42057993  T
Q  215 atacttcacctc 226  Q
     |||||||||||    
T  42057994 gtacttcacctc 42058005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 54453971 - 54453862
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  54453971 tttggtatttatagaccatgataaaatttgatgggttcatatgatctaatggtacaaaaaattgatccatcataaaccaatatttttataggttcatttt 54453872  T
Q  215 atacttcacc 224  Q
    ||||||||||    
T  54453871 atacttcacc 54453862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 216
Target Start/End: Original strand, 48513460 - 48513556
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttat 216  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  ||||||||||||||||||||||||||||| | || ||||||||||||    
T  48513460 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattggtccatcatggaccaatattctcatgggttcattttat 48513556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 31416622 - 31416525
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | | |||||| | ||||||  ||  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  31416622 gtgtttatagatcatgataaaattttg-gagttcatgtaatctaaccgttaaaaaaattggtccatcatggaccaatattctcatgggttcattttata 31416525  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 199
Target Start/End: Original strand, 37385828 - 37385907
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatattt 199  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||  |  |||||||||||| ||||| |||||||||||    
T  37385828 gtgtttatagaccatgataaaatttag-gggttcatataatctaatcattgaaaaaattggtctatcatagaccaatattt 37385907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 42057777 - 42057821
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| |||||||||||||||| ||||||||||||||    
T  42057777 tcaatacaaagtgccgtaagaaaaagactatttgtattgctaaat 42057821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 52488750 - 52488655
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttta 215  Q
    ||||||||||| ||||||||||||| | |||||||| | ||||||  ||  |||||||||||||||| | |||||||||| | |||| |||||||||    
T  52488750 gtgtttatagatcatgataaaattttg-gggttcatctaatctaaccgttgaaaaaattggtccatcttagaccaatattctcatagattcatttta 52488655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 154
Target Start/End: Complemental strand, 1605981 - 1605942
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcat 154  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  1605981 tttggtgtttatagatcatgataaaatttggtgggttcat 1605942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 218
Target Start/End: Original strand, 42478213 - 42478311
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||| ||||||||||||||||||||   ||||| |||| |||||||  |  ||||||||| ||||||||| | ||||||||| || ||||||||||||||    
T  42478213 gtgtgtatagaccatgataaaatttaa-gggtttatataatctaatcattgaaaaaattgatccatcatgaatcaatattttcatgggttcattttatac 42478311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 33748121 - 33748163
Alignment:
Q  6 aatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||| ||||||||||| |||||||||||||||||||    
T  33748121 aatacaaagtgccgtaagaaaaatactacttgtattgctaaat 33748163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 29820243 - 29820338
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttta 215  Q
    ||||||||||| ||||||||||||| | |||||||| | || |||  ||  ||||||||||||||||||  ||||||||| | || |||||||||||    
T  29820243 gtgtttatagatcatgataaaattttg-gggttcatctaatttaaccgttgaaaaaattggtccatcataaaccaatattctcatgggttcatttta 29820338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Complemental strand, 55862561 - 55862514
Alignment:
Q  170 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    ||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  55862561 aaaaaattggtccatcatggaccaatattttgat-ggttcatattatac 55862514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 34456190 - 34456143
Alignment:
Q  170 aaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    |||||| ||||||| |||||||||||||||||| |||| |||||||||    
T  34456190 aaaaaagtggtccaacatggaccaatatttttagaggtccattttata 34456143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 194
Target Start/End: Original strand, 49251394 - 49251468
Alignment:
Q  120 tgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaa 194  Q
    |||| |||||| ||||||||||||  |||| | || | ||||||| |||  ||||||||||||||||||||||||    
T  49251394 tgttgatagactatgataaaattttatgggataatctaatctaatggtaataaaaattggtccatcatggaccaa 49251468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 38582242 - 38582173
Alignment:
Q  128 gaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatat 197  Q
    ||||||||||| |||| ||||| | || | ||||||| ||   |||||||||||||||||||||||||||    
T  38582242 gaccatgataagattttgtgggataatctaatctaatggtgggaaaaattggtccatcatggaccaatat 38582173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 54454116 - 54454084
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactactt 36  Q
    ||||||||||||| |||||||||||||||||||    
T  54454116 tcaatacaaagtgccgtaagaaaaagactactt 54454084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 115 - 225
Target Start/End: Complemental strand, 60666 - 60556
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  60666 tttggtgtttatagacaatgataaaatttggtgggttcatataatctaatggtacaaaaaattggtccatcatagattaatatttttataggttcatttt 60567  T
Q  215 atacttcacct 225  Q
    |||||||||||    
T  60566 atacttcacct 60556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 60778 - 60734
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  60778 tcaatacaaagtgccgtaagaaaaagactacttgtattgctaaat 60734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 27923264 - 27923373
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||     
T  27923264 tttggtgtttataaaccatgataaaatttggtgggttcttatgatctaatggtac-aaaaattggtccatcatgaaccaatatttttataggttcattta 27923362  T
Q  215 atacttcacct 225  Q
    |||||| ||||    
T  27923363 atacttgacct 27923373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 115 - 224
Target Start/End: Complemental strand, 42062198 - 42062089
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    |||| |||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||| || |||||| ||||||||||||||||||||||||||    
T  42062198 tttgatgtttatagaccataataaaatttggtggattcatatgatctaatggtacaaaaaattagttcatcatagaccaatatttttataggttcatttt 42062099  T
Q  215 atacttcacc 224  Q
     |||||||||    
T  42062098 gtacttcacc 42062089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 42010788 - 42010691
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttata 217  Q
    ||||||||||| ||||||||||||| | |||||||| |  |||||  ||  ||||||||||||||||||||||||||||| | || |||||||||||||    
T  42010788 gtgtttatagatcatgataaaattttg-gggttcatctattctaaccgttgaaaaaattggtccatcatggaccaatattctcatgggttcattttata 42010691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 42062309 - 42062265
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||    
T  42062309 tcaatacaaagtgtcgtaaaaaaaagactaattgtattgctaaat 42062265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 27923148 - 27923192
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| ||||| ||||| |||||||||||||||||||    
T  27923148 tcaatacaaagtgccgtaataaaaatactacttgtattgctaaat 27923192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 38231146 - 38231098
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaa 163  Q
    |||||||| ||| ||||||||||| |||| ||||||| |||||||||||    
T  38231146 tttggtgtgtatggaccatgataagatttagtgggttgatatgatctaa 38231098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 7000443 - 7000552
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    ||||||||||||||||||| |||||||||||| | ||||||| ||||||| |||||||||||||||||||||| |||||||||||| ||| ||||| |||    
T  7000443 tttggtgtttatagaccataataaaatttggtagattcatataatctaatggtacaaaaaattggtccatcatagaccaatattttcatatgttca-ttt 7000541  T
Q  215 atacttcacct 225  Q
    |||||||||||    
T  7000542 atacttcacct 7000552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 122 - 208
Target Start/End: Complemental strand, 42481296 - 42481211
Alignment:
Q  122 tttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggtt 208  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42481296 tttatagaccatgataaaatttggtggattcatatgatctaatggta-aaaaaattggtccatcatggaccaatatttttataggtt 42481211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 42481434 - 42481390
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  42481434 tcaatacaaagtgccgtaagaaaaagactacttgtattgctaaat 42481390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 218
Target Start/End: Complemental strand, 14360204 - 14360106
Alignment:
Q  119 gtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    ||||||||||| |||| ||| |||| |||| ||||||| ||||||  ||  |||||||||||| || ||||||||||||||| || ||||||||||||||    
T  14360204 gtgtttatagatcatggtaagatttagtgg-ttcatataatctaaccgttgaaaaaattggtctatgatggaccaatattttcatgggttcattttatac 14360106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 11762000 - 11761899
Alignment:
Q  115 tttggtgtttatagaccatgataaaatttggtgggttcatatgatctaatagtacaaaaaattggtccatcatggaccaatatttttataggttcatttt 214  Q
    ||||||||||||||| ||| |||| ||||| ||  || ||||||| ||| | || |||||||||||||||||||||||| |||||| |||| || ||| |    
T  11762000 tttggtgtttatagatcataataagatttgatg--tttatatgatgtaacattaaaaaaaattggtccatcatggaccattattttcatagcttgattct 11761903  T
Q  215 atac 218  Q
    ||||    
T  11761902 atac 11761899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 6 - 48
Target Start/End: Complemental strand, 4106055 - 4106013
Alignment:
Q  6 aatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||| |||||| |||||||||||||||||||||||||||||||    
T  4106055 aatataaagtgccgtaagaaaaagactacttgtattgctaaat 4106013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 7000330 - 7000374
Alignment:
Q  4 tcaatacaaagtgtcgtaagaaaaagactacttgtattgctaaat 48  Q
    |||||||||| || ||||||||||||| |||||||||||||||||    
T  7000330 tcaatacaaactgccgtaagaaaaagattacttgtattgctaaat 7000374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 17033824 - 17033872
Alignment:
Q  170 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||||    
T  17033824 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17033872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 17077554 - 17077602
Alignment:
Q  170 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||||    
T  17077554 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17077602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 17088508 - 17088556
Alignment:
Q  170 aaaaaattggtccatcatggaccaatatttttataggttcattttatac 218  Q
    |||||||||||||||||||||| ||| ||||||  ||||||||||||||    
T  17088508 aaaaaattggtccatcatggacaaatttttttagtggttcattttatac 17088556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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