View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18347_low_27 (Length: 250)
Name: NF18347_low_27
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_27 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 2106778 - 2107009
Alignment:
| Q |
1 |
acatttttcttttctaaacaatttaccaacatgttattgttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2106778 |
acatttttcttttctaaacaatttaccaacatgttattgttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaa |
2106877 |
T |
|
| Q |
101 |
tgaggctttggagctaagggataactttcacttgttcagcatcttttacattcctagggtatatatttagcaatttgttctattatgtttaagttgcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2106878 |
tgaggctttggagctaagggataactttcacttgttcagcatcttttacattcctagggtatatatttagcaatttgttctattatgtttaagttgcatc |
2106977 |
T |
|
| Q |
201 |
tttctcaattgagcactgctttgtgaagttga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2106978 |
tttctcaattgagcactgctttgtgaagttga |
2107009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 2098318 - 2098488
Alignment:
| Q |
1 |
acatttttcttttctaaacaatttaccaacat--gttattgttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgc |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2098318 |
acatttttcttttctaaacaatttaccaacatatgttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgc |
2098417 |
T |
|
| Q |
99 |
aatgaggctttggagctaagggataactttcacttgttcagcatcttttacattcctagggtatatattta |
169 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2098418 |
aatgaggccttggagctaagggataactttcacttgttcagcatcttttacattcctagggtatttattta |
2098488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 2088541 - 2088674
Alignment:
| Q |
2 |
catttttcttttctaaacaatttaccaacat--gttattg-ttttccaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgc |
98 |
Q |
| |
|
||||||||||||||||||||| ||| || || ||||||| |||| |||||||| || |||| ||| |||||| ||||||| ||||||||| |||||| |
|
|
| T |
2088541 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
2088640 |
T |
|
| Q |
99 |
aatgaggctttggagctaagggataactttcact |
132 |
Q |
| |
|
|| |||||||||||||| | || | ||||||||| |
|
|
| T |
2088641 |
aacgaggctttggagctgaagggtgactttcact |
2088674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 2048176 - 2048225
Alignment:
| Q |
83 |
tttaaggaacttatgcaatgaggctttggagctaagggataactttcact |
132 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
2048176 |
tttaaggaacttatgcgatgaggctttggagctagcagataactttcact |
2048225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 231
Target Start/End: Original strand, 2098485 - 2098528
Alignment:
| Q |
188 |
tttaagttgcatctttctcaattgagcactgctttgtgaagttg |
231 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
2098485 |
tttaagttgctcctttctcaattgagcattgctttgtgaagttg |
2098528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 2054417 - 2054498
Alignment:
| Q |
81 |
tatttaaggaacttatgcaatgaggctttggagctaagggataactttcacttgttcagcatcttttacattcctagggtat |
162 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||| | ||| | |||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2054417 |
tatttatggaacttgtgcaatgaggctttgcagctgaaggaaagctttcactcattcagcatccaacacattcctagggtat |
2054498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University