View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18347_low_29 (Length: 241)

Name: NF18347_low_29
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18347_low_29
NF18347_low_29
[»] chr7 (5 HSPs)
chr7 (1-227)||(36887250-36887476)
chr7 (83-136)||(36598327-36598380)
chr7 (77-135)||(5276278-5276336)
chr7 (86-136)||(24909834-24909884)
chr7 (66-135)||(28165138-28165207)
[»] chr1 (4 HSPs)
chr1 (66-136)||(27807161-27807231)
chr1 (66-136)||(31517694-31517764)
chr1 (81-133)||(4481979-4482031)
chr1 (96-136)||(37842339-37842379)
[»] chr5 (3 HSPs)
chr5 (66-135)||(4619754-4619823)
chr5 (83-136)||(37611186-37611239)
chr5 (83-136)||(37787916-37787969)
[»] chr4 (4 HSPs)
chr4 (66-135)||(2996620-2996689)
chr4 (81-136)||(21043204-21043259)
chr4 (66-135)||(50742790-50742859)
chr4 (96-136)||(1137758-1137798)
[»] chr3 (5 HSPs)
chr3 (96-136)||(48048966-48049006)
chr3 (66-133)||(2304225-2304292)
chr3 (67-135)||(2175804-2175872)
chr3 (81-129)||(21574543-21574591)
chr3 (96-136)||(45541617-45541657)
[»] chr6 (2 HSPs)
chr6 (96-135)||(769185-769224)
chr6 (66-135)||(27595521-27595590)
[»] chr2 (3 HSPs)
chr2 (66-136)||(787378-787448)
chr2 (66-136)||(43456661-43456731)
chr2 (81-133)||(1494415-1494467)
[»] chr8 (1 HSPs)
chr8 (108-165)||(25097392-25097449)
[»] scaffold0608 (1 HSPs)
scaffold0608 (81-133)||(9606-9658)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 36887250 - 36887476
Alignment:
Q  1 tatcaatatcattctgatcttagggtctaactgaattgacttacttaagcttaattactggtataataagcacttataaaactgtttgagagaggttatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36887250 tatcaatatcattctgatcttagggtctaactgaattgacttacttaagcttaattactggtataataagcacttataaaactgtttgagagaggttatg 36887349  T
Q  101 aaaccatctcatgacatgttcataagctgttttcagaagctcttgaggataacatataaaaacagtccttaattaagctgtttatcaaaacaacgtctaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36887350 aaaccatctcatgacatgttcataagctgttttcagaagctcttgaggataacatataaaaacagtccttaattaagctgtttatcaaaacaatgtctaa 36887449  T
Q  201 gtaagaaatatgatgattgaggttggt 227  Q
    |||||||||||||||||||||||||||    
T  36887450 gtaagaaatatgatgattgaggttggt 36887476  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 36598327 - 36598380
Alignment:
Q  83 tgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||||||| ||||| || ||||| ||||||||||||||||||||||||||    
T  36598327 tgtttgagagagcttatggaaacatcttatgacatgttcataagctgttttcag 36598380  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 5276336 - 5276278
Alignment:
Q  77 taaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    |||||||||||||||||| ||||| || ||||| ||||||| ||||| || ||||||||    
T  5276336 taaaactgtttgagagagcttatgcaaacatcttatgacatcttcattagttgttttca 5276278  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 24909884 - 24909834
Alignment:
Q  86 ttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    ||||||||  |||||||| || || ||||||||||||||||||||||||||    
T  24909884 ttgagagaacttatgaaatcaactaatgacatgttcataagctgttttcag 24909834  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 28165207 - 28165138
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    |||||||||||| | ||| ||||||| || ||||| || || |||| ||| |||||||||||||||||||    
T  28165207 ataagcacttatgagactctttgagatagcttatggaaacagctcaagacctgttcataagctgttttca 28165138  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 27807231 - 27807161
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    ||||||| || ||| |||||||||||||| |||||||| || || ||||| |||||||||||||| |||||    
T  27807231 ataagcatttgtaagactgtttgagagagcttatgaaagcagctgatgacgtgttcataagctgtcttcag 27807161  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 31517694 - 31517764
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||||| | | |||||||| ||||  |||| ||| || |||||||||||||||||||||||||||||    
T  31517694 ataagcacttgtgagactgtttgggagaacttatcaaaacaactcatgacatgttcataagctgttttcag 31517764  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 4482031 - 4481979
Alignment:
Q  81 actgtttgagagaggttatgaaaccatctcatgacatgttcataagctgtttt 133  Q
    |||||||||||||  |||||||| || || || ||||||||||||||||||||    
T  4482031 actgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttt 4481979  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 37842339 - 37842379
Alignment:
Q  96 ttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||| ||||| ||||||||||||||||| ||||||||    
T  37842339 ttatgaaaacatctaatgacatgttcataagcagttttcag 37842379  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 4619823 - 4619754
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    ||||||||||  || |||||||| ||||| |||||||| || || ||||||||||||||||||| |||||    
T  4619823 ataagcacttgcaacactgtttgggagagcttatgaaaacaactaatgacatgttcataagctggtttca 4619754  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 37611186 - 37611239
Alignment:
Q  83 tgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||||||| |||||||| || ||  |||||||||||||||||||||||||    
T  37611186 tgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcag 37611239  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 37787916 - 37787969
Alignment:
Q  83 tgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||||||| |||||||| || ||  |||||||||||||||||||||||||    
T  37787916 tgtttgagagagcttatgaaaacaacttgtgacatgttcataagctgttttcag 37787969  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 135
Target Start/End: Complemental strand, 2996689 - 2996620
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    |||||||||| | | |||||||||||||| |||||||| || || ||||||||| |||||||| ||||||    
T  2996689 ataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgtccataagcttttttca 2996620  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 136
Target Start/End: Original strand, 21043204 - 21043259
Alignment:
Q  81 actgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||| ||||||||||| || || || |||||| |||||||||||||||||||    
T  21043204 actgtttgggagaggttatggaaacagcttatgacacgttcataagctgttttcag 21043259  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 50742790 - 50742859
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    |||||||||| | | |||||||||||||  |||||||| ||  ||||||||||||||||  |||||||||    
T  50742790 ataagcacttgttagactgtttgagagaacttatgaaaacagttcatgacatgttcataccctgttttca 50742859  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 1137798 - 1137758
Alignment:
Q  96 ttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||| ||||| |||||||||||||||| |||||||||    
T  1137798 ttatgaaaacatcttatgacatgttcataagttgttttcag 1137758  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 48048966 - 48049006
Alignment:
Q  96 ttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  48048966 ttatgaaaccaactcatgacatgtccataagctgttttcag 48049006  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 2304225 - 2304292
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgtttt 133  Q
    |||| ||||| | ||||| |||||||||  |||||||| || || |||||||||||||||||||||||    
T  2304225 ataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgttcataagctgtttt 2304292  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 2175804 - 2175872
Alignment:
Q  67 taagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    ||||||||| ||| ||| ||||||| || |||||||| || || ||||||||||  |||||||||||||    
T  2175804 taagcacttgtaagactatttgagatagtttatgaaaacaacttatgacatgtttgtaagctgttttca 2175872  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 21574591 - 21574543
Alignment:
Q  81 actgtttgagagaggttatgaaaccatctcatgacatgttcataagctg 129  Q
    |||||||| ||||| |||||||| || || |||||||||||||||||||    
T  21574591 actgtttgggagagcttatgaaaacaacttatgacatgttcataagctg 21574543  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 45541657 - 45541617
Alignment:
Q  96 ttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||| || || ||||||||||||||||||||||||||    
T  45541657 ttatgaaaacagcttatgacatgttcataagctgttttcag 45541617  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 135
Target Start/End: Complemental strand, 769224 - 769185
Alignment:
Q  96 ttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  769224 ttatgaaaacatcttatgacatgttcataagctgttttca 769185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 27595521 - 27595590
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttca 135  Q
    |||||||||||| | |||||||| ||||  ||||| || || || |||||||||||||||||| ||||||    
T  27595521 ataagcacttatgagactgtttgggagaatttatggaaacaacttatgacatgttcataagctattttca 27595590  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 787448 - 787378
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||||||||| | | |||||||| ||||  |||||||| || || ||||||||| ||||||||||||||||    
T  787448 ataagcacttgtgacactgtttgtgagaacttatgaaaacagcttatgacatgtccataagctgttttcag 787378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 43456661 - 43456731
Alignment:
Q  66 ataagcacttataaaactgtttgagagaggttatgaaaccatctcatgacatgttcataagctgttttcag 136  Q
    |||| ||||| ||| ||||||||| |||| || ||||| || |||||||||||| ||||| ||||||||||    
T  43456661 ataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgtccataaactgttttcag 43456731  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 1494415 - 1494467
Alignment:
Q  81 actgtttgagagaggttatgaaaccatctcatgacatgttcataagctgtttt 133  Q
    |||||||||||||| |||||||| || || ||||||||| ||||| |||||||    
T  1494415 actgtttgagagagcttatgaaaacagcttatgacatgtccataaactgtttt 1494467  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 25097449 - 25097392
Alignment:
Q  108 ctcatgacatgttcataagctgttttcagaagctcttgaggataacatataaaaacag 165  Q
    |||||||||||||||||||| ||||||| |||||||  |||||| | ||| |||||||    
T  25097449 ctcatgacatgttcataagcagttttcataagctctccaggatagcttatgaaaacag 25097392  T

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Target: scaffold0608 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 9606 - 9658
Alignment:
Q  81 actgtttgagagaggttatgaaaccatctcatgacatgttcataagctgtttt 133  Q
    |||||||||||||  |||||||| || || || ||||||||||||||||||||    
T  9606 actgtttgagagaacttatgaaaacaacttattacatgttcataagctgtttt 9658  T

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