View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_30 (Length: 238)
Name: NF18347_low_30
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 46 - 224
Target Start/End: Original strand, 7187304 - 7187486
Alignment:
| Q |
46 |
acttgaagtcgtactagtagaagatacgtgcacaacacatagaagcagcataaactaaaacgtgccacatat----tattaacattattgaagttggatt |
141 |
Q |
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| T |
7187304 |
acttgaagtcgtactagtagaagatacgtgcacaacacgtagaagcagcataaactaaaacgtgccacatatatattattaacattattgaagttggatt |
7187403 |
T |
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| Q |
142 |
ctgcaaattttaaaaaacaaacatatagtgtttgtgtttcattgtcgcttgacaagagaaatgatcaaattgatgtatttggt |
224 |
Q |
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| T |
7187404 |
ctgcaaattttaaaaaacaaacatatagtgtttgtgtttcattgtcgcttgacaagagaaatgatcaaattgatgtatttggt |
7187486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 224
Target Start/End: Original strand, 7175704 - 7175810
Alignment:
| Q |
122 |
aacattattgaagttggattctgcaaa-ttttaaaaaacaaa--catat-agtgtttgtgtttcattgtcgcttgacaagagaaatgatcaaattgatgt |
217 |
Q |
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| T |
7175704 |
aacattattgaagttggattctcccaacttttataaaacaaatacacatgattgtttgtgtttcattgtcgcttgacaagagaaatgaccaaattgatgc |
7175803 |
T |
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| Q |
218 |
atttggt |
224 |
Q |
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||||||| |
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| T |
7175804 |
atttggt |
7175810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 7187229 - 7187275
Alignment:
| Q |
1 |
aatacaaggaccatttggatattcctcgccaattatccttcgttcac |
47 |
Q |
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| T |
7187229 |
aatacaaggaccatttggatattcctcgccaattatctttcattcac |
7187275 |
T |
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