View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_31 (Length: 230)
Name: NF18347_low_31
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 25164891 - 25164694
Alignment:
| Q |
16 |
atgaaataacacaatttgttgattattagtcaattatgcaacaaatggtggaaaatttatttcaaccatcttggttatgaaatagagcatgatacaaac- |
114 |
Q |
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| T |
25164891 |
atgaaatgacacaatttgttgattattagtcaattatgcaacaaatggtggaaaaattatttcaaccatcttggttatgaaatagagcatgatacaaaca |
25164792 |
T |
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| Q |
115 |
aaaacaaagtgtatttaaggggttaagaaatctagatgatgtttcatcaaagggatcgaagtgcctcataaccaagagtgtagaatcatggttattat |
212 |
Q |
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| T |
25164791 |
aaaacaaagtgtgtttaaggggttaagaaatctagatgatgtttcatcaaagggatcgaagggcctcataaccaagagtgtagaatcatggttattat |
25164694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 25230775 - 25230835
Alignment:
| Q |
57 |
caaatggtggaaaatttatttcaaccatcttggttatgaaatagagcatgatacaaacaaa |
117 |
Q |
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| T |
25230775 |
caaatggtggaaaatttatttcaacccccttggttgtgtaatagagcattatacaaacaaa |
25230835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 25230837 - 25230875
Alignment:
| Q |
174 |
agtgcctcataaccaagagtgtagaatcatggttattat |
212 |
Q |
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| T |
25230837 |
agtgcctcataaccaagagtgtagaatcatggttattat |
25230875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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