View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_4 (Length: 650)
Name: NF18347_low_4
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 607; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 9 - 631
Target Start/End: Complemental strand, 54449542 - 54448920
Alignment:
| Q |
9 |
tagattatactcctatcgatttcattgttttgtgcaattaactctcttaagtaacccctgttgtttcagattccgcaatatggaatatttgaaaatgtaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449542 |
tagattatactcctatcgatttcattgttttgtgcaattaactctcttaagtaacccctgttgtttcagattccgcaatatggaatatttgaaaatgtaa |
54449443 |
T |
|
| Q |
109 |
attcactagaggagctagcaaaaatgcctcaatggacggaagataagcctctgcgagttgcaactggattcacctatgtatgtgattcacatttaactga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449442 |
attcactagaggagctagcaaaaatgcctcaatggacggaagataagcctctgcgagttgcaactggattcacctatgtatgtgattcacatttaactga |
54449343 |
T |
|
| Q |
209 |
tgttttgaagttttatctgtggtacagtttctgttgttttccttttaaaagagaaagtctgatctgagtttccttcttactcttcagctgggtcctaaat |
308 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449342 |
tgttttgaagttttatgtgtggtacagtttctgttgttttccttttaaaagagaaagtctgatctgagtttccttcttactcttcagctgggtcctaaat |
54449243 |
T |
|
| Q |
309 |
ttatgaaagataatggtattaagcatgtggcattttcgactgctgacggagcactggaggcagctcctgcggtaagagatactgtttgttttattcaaag |
408 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
54449242 |
ttatgaaagataatggtattaagcatgtggcattttcgactgctgacggagcactggaggcagctcctgcggtaagagacagtgtttgttttattcaaag |
54449143 |
T |
|
| Q |
409 |
ttattcctgtatgttttcagattctaaatcatatatttgattgttttgtgttttgttatgagttatgacttaaatcaaatgatagttattgggatttgga |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449142 |
ttattcctgtatgttttcagattctaaatcatatatttgattgttttgtgttttgttatgagttatgacttaaatcaaatgatagttattgggatttgga |
54449043 |
T |
|
| Q |
509 |
aggagtttgatggctatagttgttgataaattctgtctttgctgcatagcttaatacactaatcacggttgaatattttctgtgatcccaaaaatcaaag |
608 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54449042 |
aggagtttgacggctatagttgttgataaattctgtctttgctgcatagcttaatacactaatcacggttgaatattttctgtgatcccaaaaatcaaag |
54448943 |
T |
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| Q |
609 |
ataaccatgccgttaatgtctaa |
631 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
54448942 |
ataaccatgccgttaatgtctaa |
54448920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 171; Significance: 2e-91; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 245 - 499
Target Start/End: Complemental strand, 428818 - 428564
Alignment:
| Q |
245 |
ttttccttttaaaagagaaagtctgatctgagtttccttcttactcttcagctgggtcctaaatttatgaaagataatggtattaagcatgtggcatttt |
344 |
Q |
| |
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||||||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
428818 |
ttttccttttaaatgagaaggtctgatctgaatttccttcttactgttcagctgggtcctaaatttatgaaagataatggcattaagcatgtggcatttt |
428719 |
T |
|
| Q |
345 |
cgactgctgacggagcactggaggcagctcctgcggtaagagatactgtttgttttattcaaagttattcctgtatgttttcagattctaaatcatatat |
444 |
Q |
| |
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| ||||| || |||||||||||||||||||||||||| ||||||| | ||||||||||| |||||| |||| |||||||||||||| |||| ||||||| |
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| T |
428718 |
caactgccgatggagcactggaggcagctcctgcggtgagagatagtctttgttttattagaagttaatcctttatgttttcagattttaaagcatatat |
428619 |
T |
|
| Q |
445 |
ttgattgttttgtgttttgttatgagttatgacttaaatcaaatgatagttattg |
499 |
Q |
| |
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||||||||| |||||||||||||| |||||| ||| ||||||||||||||||||| |
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| T |
428618 |
ttgattgttctgtgttttgttatgcgttatgccttgaatcaaatgatagttattg |
428564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 428972 - 428852
Alignment:
| Q |
69 |
ttgtttcagattccgcaatatggaatatttgaaaatgtaaattcactagaggagctagcaaaaatgcctcaatggacggaagataagcctctgcgagttg |
168 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||| |||||| |
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| T |
428972 |
ttgtttcagattccccaatatggaatatttgaaaatgtaaattcactagaggagcttgcaaaaatgcctcaatggacaaaagaaaagcctcttagagttg |
428873 |
T |
|
| Q |
169 |
caactggattcacctatgtat |
189 |
Q |
| |
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||||||||||||||||||||| |
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| T |
428872 |
caactggattcacctatgtat |
428852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 524 - 627
Target Start/End: Complemental strand, 428573 - 428470
Alignment:
| Q |
524 |
atagttgttgataaattctgtctttgctgcatagcttaatacactaatcacggttgaatattttctgtgatcccaaaaatcaaagataaccatgccgtta |
623 |
Q |
| |
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|||||| |||||||||| |||||||||| ||||||| |||||||||||| |||||||||||| |||||||||||||||||| ||||||||| | |||| |
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| T |
428573 |
atagttattgataaatttggtctttgctgtatagctttatacactaatcatggttgaatatttcatgtgatcccaaaaatcaaggataaccattctgtta |
428474 |
T |
|
| Q |
624 |
atgt |
627 |
Q |
| |
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|||| |
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|
| T |
428473 |
atgt |
428470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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