View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18347_low_5 (Length: 621)
Name: NF18347_low_5
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_5 |
 | |
|
| [»] scaffold0130 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 194 - 615
Target Start/End: Original strand, 47799995 - 47800415
Alignment:
| Q |
194 |
attttacattttgaaatatatgatgcacttctaatattactactattgtaggttaaataaatctgtgcaaattcaactcactcatcaaacaaaattctaa |
293 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||||| | || || || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
47799995 |
attttacattttgaagtatatgatgcacttctaatattactactgctgtaggctcaaaaattcagtgcaaattcaactcactcatcaaacaaaattctaa |
47800094 |
T |
|
| Q |
294 |
tggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttacc |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47800095 |
tggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgccttt-caaaatgcaatctaagacaagcaataatttacc |
47800193 |
T |
|
| Q |
394 |
taagttaaggacttttcttacacgaatcagaggtatagagatgattgtgtagtggatggaatcaagagataacgatatgaatgtctgaaggttatctgtt |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47800194 |
taagttaaggacttttcttacacgaatcagaggtatagagatgattgtgtagtggatggaatcaagagataacgatatgaatgtctgaaggttatctgtt |
47800293 |
T |
|
| Q |
494 |
tgcaggtctgaatctatttgtttatttgataaaattcaaaggttaaccgccgagaaggagttaactatatgttatcatagttatgagcgacaaccttgaa |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47800294 |
tgcaggtctgaatctatttgtttatttgataaaattcaaaggttaaccgccgagaaggagttaactatatgttatcatagttatgagcgacagccttgaa |
47800393 |
T |
|
| Q |
594 |
acaactgtatatgatgatgtcc |
615 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47800394 |
acaactgtatatgatgatgtcc |
47800415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 540
Target Start/End: Original strand, 48755583 - 48755673
Alignment:
| Q |
450 |
tggaatcaagagataacgatatgaatgtctgaaggttatctgtttgcaggtctgaatctatttgtttatttgataaaattcaaaggttaac |
540 |
Q |
| |
|
|||||||||||||||| | || ||| ||||||| |||||| |||||||||||||| |||||| || ||||||||||| |||| |||||| |
|
|
| T |
48755583 |
tggaatcaagagataaaggtaggaaggtctgaatcttatctatttgcaggtctgaaactatttacttgtttgataaaatgcaaaagttaac |
48755673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 47799910 - 47799960
Alignment:
| Q |
99 |
attgcacttgatggcaattatattggttatagacaaaattaaatgaggtga |
149 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||| ||| ||||||||||||| |
|
|
| T |
47799910 |
attgcacttgaaggcaactatattggttatagataaagttaaatgaggtga |
47799960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 438
Target Start/End: Complemental strand, 11326975 - 11326829
Alignment:
| Q |
293 |
atggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttac |
392 |
Q |
| |
|
||||||| ||||||||||||||| |||| | || ||||| | || |||| ||||||| |||| || | ||||||||||||| || |||| ||| || |
|
|
| T |
11326975 |
atggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaaaccttcacgatatgcaatctaagagaatcaatgattaac |
11326876 |
T |
|
| Q |
393 |
ctaagttaa-ggacttttcttacacgaatcagaggtatagagatgat |
438 |
Q |
| |
|
||||| ||| |||| ||||| || |||||||||||||||| ||||| |
|
|
| T |
11326875 |
ctaaggtaaaggacatttctctcatgaatcagaggtatagatatgat |
11326829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 293 - 438
Target Start/End: Complemental strand, 11484996 - 11484850
Alignment:
| Q |
293 |
atggtttgttgtgttttctatttcggttggttttgatatttcattgtctattattcctcgtgcctttacaaaatgcaatctaagacaagcaataatttac |
392 |
Q |
| |
|
||||||| ||||||||||||||| |||| | || ||||| | || |||| ||||||| |||| || | ||||||||||||| || |||| ||| || |
|
|
| T |
11484996 |
atggtttattgtgttttctatttgagttgctctttgtatttaaatggctatgattcctcaaaccttcacgatatgcaatctaagagaatcaatgattaac |
11484897 |
T |
|
| Q |
393 |
ctaagttaa-ggacttttcttacacgaatcagaggtatagagatgat |
438 |
Q |
| |
|
||||| ||| |||| ||||| || |||||||||||||||| ||||| |
|
|
| T |
11484896 |
ctaaggtaaaggacatttctctcatgaatcagaggtatagatatgat |
11484850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0130 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0130
Description:
Target: scaffold0130; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24610 - 24670
Alignment:
| Q |
1 |
cctgatacaataaaagggtcctactactctctatcataatgggaaaaacgattggaaataa |
61 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24610 |
cctgatgcaataaaagggtcctactactctctatcataatgggaaaaacgattgaaaataa |
24670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 28730916 - 28730988
Alignment:
| Q |
340 |
ctattattcctcgtgcctttacaaaatgcaatctaagac-aagcaataatttacctaagttaaggacttttct |
411 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
28730916 |
ctatgattcctcatgcctttacaaaatgcaatccaagacaaagcaatgatttacctaagttaaggacatttct |
28730988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 340 - 411
Target Start/End: Original strand, 28735607 - 28735679
Alignment:
| Q |
340 |
ctattattcctcgtgcctttacaaaatgcaatctaagac-aagcaataatttacctaagttaaggacttttct |
411 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||| |
|
|
| T |
28735607 |
ctatgattcctcatgcctttacaaaatgcaatccaagacaaagcaatgatttacctaagttaaggacatttct |
28735679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University