View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18347_low_6 (Length: 590)
Name: NF18347_low_6
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 228 - 584
Target Start/End: Original strand, 4255207 - 4255564
Alignment:
| Q |
228 |
aatctggttcggttatttttgactggttgttcaaattgttgtatcattccaccacttggacaactgcagactctcaaatacttggcgattgctgatatgt |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4255207 |
aatctggttcggttatttttgactggttgttcaaattgttgtatcattccaccacttggacaactgcagactctcaaatacttggcgattgctgatatgt |
4255306 |
T |
|
| Q |
328 |
gtatgctggaaactgttggatctgaatatggtgataccttttcagggacatcttttccctcccttgagcatctagagtttgatgatataccatgttggca |
427 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4255307 |
gtatgctggaaactgttggatctgaatatggtgataccttttcagggacatcttttccctcccttgagcatctagagtttgatgatataccatgttggca |
4255406 |
T |
|
| Q |
428 |
agtgtggcatcatccccatgattcatatgcttcttttcctgtaataaagtcccttatgatttgtaactgtccta-gactacggggaaatttgccctctta |
526 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
4255407 |
agtgtggcatcatccccatgattcatatgcttcttttcctgtatcaaagtcccttgtgatttgtaactgtcctaggactacggggaaatttgccctctta |
4255506 |
T |
|
| Q |
527 |
tcttcctgctttggaaactattcaaattgaacaatgcggccaactttcttcttctctc |
584 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
4255507 |
tcttcctgctttggaaactattcaaattgagcaatgcggccaactttcttcttctctc |
4255564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 4255072 - 4255212
Alignment:
| Q |
18 |
gaagcatcagaggcaaagataatggataaggagtaccatgatgagttatggtttttatggtctcaggatgcaaaggaccattttacaaattcacaaagtg |
117 |
Q |
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| T |
4255072 |
gaagcatcagaggcaaagataatggataaggagtaccttgatgagttatggtttttatggtctcaggatgcaaaggaccattttacaaattcacaaagtg |
4255171 |
T |
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| Q |
118 |
aaatggatatactttgcaagttacaaccttccaagaatctg |
158 |
Q |
| |
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| T |
4255172 |
aaatggatatactttgcaaattacagccttccaagaatctg |
4255212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 470
Target Start/End: Complemental strand, 4313412 - 4312960
Alignment:
| Q |
18 |
gaagcatcagaggcaaagataatggataaggagtaccatgatgag-ttatggtttttatggtctcaggatgcaaaggaccattttacaaattcacaaagt |
116 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||| ||| ||| |||| || | ||||||||| |||| ||| || ||||||||| |||| |||||| |
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| T |
4313412 |
gaagcctcagaggcaaagataatggataagaagtaccttga-gagattattattgtcatggtctcaagatgtaaatgatcattttacagattcgcaaagt |
4313314 |
T |
|
| Q |
117 |
gaaatggatatactttgcaagttacaaccttccaagaatctgaaaaggctaggtatacatggatacagaggcacgagatttccagaatgggttggagatc |
216 |
Q |
| |
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|| |||||||||||| ||||||||||||| |||| | |||||| ||| | |||| ||||||| | ||||| ||||||||| ||||||||||||||| |
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| T |
4313313 |
gagatggatatacttggcaagttacaacccgtcaagtacttgaaaatgcttgatataaatggatatattggcacaagatttccaaaatgggttggagatc |
4313214 |
T |
|
| Q |
217 |
cttcctaccacaatctggttcggttatttttgactggttgttcaaattgttgtatcattccaccacttggacaactgcagactctcaaatacttggcgat |
316 |
Q |
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|||| ||||||||| | | |||| | || |||||||| ||||||||||||| ||||||| ||||||| | | || ||||||| | ||| || |
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| T |
4313213 |
cttcttaccacaatttaactgaattatatgtgtctggttgtccaaattgttgtattcttccaccccttggactattacattctctcaaggatttgaaaat |
4313114 |
T |
|
| Q |
317 |
tgctgatatgtgtatgctggaaactgttggatctgaatatggtgataccttttcagggacatcttttccctcccttgagcatctagagtttgatgatata |
416 |
Q |
| |
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| | ||| ||||||| || ||| |||||||||||||||||||| | ||||| |||||| ||||||||||||||| | | ||||| ||| || |
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| T |
4313113 |
cggcaaaatgagtatgcttgagactattggatctgaatatggtgattcattttccgggacaatttttccctcccttgaaagtttgaagttttttgacatg |
4313014 |
T |
|
| Q |
417 |
ccatgttggcaagtgtggcatcatccccatgattcatatgcttcttttcctgta |
470 |
Q |
| |
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||||||||| || ||||||||||| ||||| | ||| ||| ||||||||||||| |
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| T |
4313013 |
ccatgttggaaaatgtggcatcattcccataaatcagatgattcttttcctgta |
4312960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 4248028 - 4248161
Alignment:
| Q |
97 |
attttacaaattcacaaagtgaaatggatatactttgcaagttacaaccttccaagaatctgaaaaggctaggtatacatggatacagaggcacgagatt |
196 |
Q |
| |
|
||||| || ||||||||||||| ||| ||||||| ||||||||||||||| |||||| || |||||||| | || ||||||||||| | ||| |
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| T |
4248028 |
atttttcagattcacaaagtgagatgaatatactcagcaagttacaaccttacaagaacttggaaaggctatatctatccaattacagaggcacaaaatt |
4248127 |
T |
|
| Q |
197 |
tccagaatgggttggagatccttcctaccacaat |
230 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
4248128 |
tccaaaatgggttggagatccttcctaccacaat |
4248161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 355 - 584
Target Start/End: Original strand, 4248295 - 4248524
Alignment:
| Q |
355 |
atggtgataccttttcagggacatcttttccctcccttgagcatctagagtttgatgatataccatgttggcaagtgtggcatcatccccatgattcata |
454 |
Q |
| |
|
|||| ||| || |||||| |||| | ||| ||||||| |||||||||||| || ||| || |||||| | || ||||||||||||| || | ||| | |
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| T |
4248295 |
atggagattccatttcagagacaccatttgcctccctggagcatctagagattcgtgaaatgtcatgtttggaaatgtggcatcatccacacaagtcaga |
4248394 |
T |
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| Q |
455 |
tgcttcttttcctgtaataaagtcccttatgatttgtaactgtcctagactacggggaaatttgccctcttatcttcctgctttggaaactattcaaatt |
554 |
Q |
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||||| |||| ||||| | |||| ||| ||||| | | ||||| | | |||||||| |||| || || ||||||||||||||||||| ||| | ||| |
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| T |
4248395 |
tgcttatttttctgtacttaagtgcctagtgattactgattgtcccaaattacggggagatttaccaactcatcttcctgctttggaaacaattgagatt |
4248494 |
T |
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| Q |
555 |
gaacaatgcggccaactttcttcttctctc |
584 |
Q |
| |
|
|||| |||| |||||| ||||||||||| |
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| T |
4248495 |
gaacgatgcaatcaacttgcttcttctctc |
4248524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 97 - 230
Target Start/End: Original strand, 41934596 - 41934729
Alignment:
| Q |
97 |
attttacaaattcacaaagtgaaatggatatactttgcaagttacaaccttccaagaatctgaaaaggctaggtatacatggatacagaggcacgagatt |
196 |
Q |
| |
|
|||||||| |||| |||||||| ||||||||||| ||||||||||| ||| ||||| | ||| ||| |||||||||| |||||||||| |||||| |||| |
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| T |
41934596 |
attttacagattcgcaaagtgagatggatatactgtgcaagttacagcctgccaagtacctggaaaagctaggtatagatggatacaggggcacgcgatt |
41934695 |
T |
|
| Q |
197 |
tccagaatgggttggagatccttcctaccacaat |
230 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |
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| T |
41934696 |
tccagaatgggttggagatccttcttaccacaat |
41934729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 469
Target Start/End: Complemental strand, 34801162 - 34801115
Alignment:
| Q |
422 |
ttggcaagtgtggcatcatccccatgattcatatgcttcttttcctgt |
469 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34801162 |
ttgggaagtgtggcatcatccccatgagtcatatgcttcttttcctgt |
34801115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 216
Target Start/End: Complemental strand, 34801356 - 34801320
Alignment:
| Q |
180 |
tacagaggcacgagatttccagaatgggttggagatc |
216 |
Q |
| |
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||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
34801356 |
tacagaggcacaagatttccagaatgggttgaagatc |
34801320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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