View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18347_low_8 (Length: 503)
Name: NF18347_low_8
Description: NF18347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18347_low_8 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Original strand, 45283028 - 45283501
Alignment:
| Q |
12 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctgg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
45283028 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctgg |
45283127 |
T |
|
| Q |
112 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283128 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
45283227 |
T |
|
| Q |
212 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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|
| T |
45283228 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatgaacagc |
45283327 |
T |
|
| Q |
312 |
ttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacca |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283328 |
ttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacca |
45283427 |
T |
|
| Q |
412 |
ttttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283428 |
ttttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
45283501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 45294413 - 45294890
Alignment:
| Q |
9 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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|
| T |
45294413 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45294512 |
T |
|
| Q |
109 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
45294513 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45294612 |
T |
|
| Q |
209 |
tctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaac |
308 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45294613 |
tctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaac |
45294712 |
T |
|
| Q |
309 |
agcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggca |
408 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45294713 |
agcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggta |
45294812 |
T |
|
| Q |
409 |
ccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttt |
486 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45294813 |
ccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgccttt |
45294890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 9 - 486
Target Start/End: Original strand, 45303373 - 45303850
Alignment:
| Q |
9 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
45303373 |
agcagagatccatgaagggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgc |
45303472 |
T |
|
| Q |
109 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
45303473 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttct |
45303572 |
T |
|
| Q |
209 |
tctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaac |
308 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45303573 |
tctcaccgtcattttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaac |
45303672 |
T |
|
| Q |
309 |
agcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggca |
408 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
45303673 |
agcttgaatgttgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggta |
45303772 |
T |
|
| Q |
409 |
ccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttt |
486 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45303773 |
ccatcttcctttccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgccttt |
45303850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Original strand, 45271254 - 45271727
Alignment:
| Q |
12 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgctgg |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||| |
|
|
| T |
45271254 |
agagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctgg |
45271353 |
T |
|
| Q |
112 |
aggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttcttct |
211 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271354 |
aggatgtcagacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttct |
45271453 |
T |
|
| Q |
212 |
caccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
45271454 |
caccatcatttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatgaacagc |
45271553 |
T |
|
| Q |
312 |
ttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcacca |
411 |
Q |
| |
|
|| ||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
45271554 |
ttcaatgttgttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagccatcttggcacca |
45271653 |
T |
|
| Q |
412 |
ttttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
485 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45271654 |
tttttctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgcctt |
45271727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 485
Target Start/End: Original strand, 45274784 - 45275260
Alignment:
| Q |
9 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacgtcaagttgaattgc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
45274784 |
agcagagatccatgaagggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgc |
45274883 |
T |
|
| Q |
109 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaacagcggtaaccttctgtacgctgtccaaactctgaacatggaattgctccttgatcttct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
45274884 |
tggaggatgtcggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttct |
45274983 |
T |
|
| Q |
209 |
tctcaccatcatttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaac |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
45274984 |
tctcaccatcatttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatgaac |
45275083 |
T |
|
| Q |
309 |
agcttgaatgttgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggca |
408 |
Q |
| |
|
||||||||||||||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45275084 |
agcttgaatgttgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggca |
45275183 |
T |
|
| Q |
409 |
ccattttcctttccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgcctt |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
45275184 |
ccattttcctttccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgcctt |
45275260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 323
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
229 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
323 |
Q |
| |
|
|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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