View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18348_high_10 (Length: 238)
Name: NF18348_high_10
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 26799690 - 26799792
Alignment:
| Q |
18 |
cataacaactccttcacttgctactttaaatgcctccatttctcaggtttgattcaggttttgctacttcaatataaagtatttatacacagacaatttt |
117 |
Q |
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| T |
26799690 |
cataccaactccttcacttgctactttaaatgcctccatttctcaagtgtgattcaggttttgctacttcaatataaagtatttatacacagacaatttt |
26799789 |
T |
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| Q |
118 |
atc |
120 |
Q |
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||| |
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| T |
26799790 |
atc |
26799792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 26799780 - 26799877
Alignment:
| Q |
140 |
agacaattttatctttgacgagtacaacagctataatataaaataaatcacctccttctgttaattttgcatataaaataatataggataaagataatt |
238 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
26799780 |
agacaattttatctgtgacgagtacaacagctataatataaaataaatcacctccttctgttaattttgcatataaaa-aatatagtataaagataatt |
26799877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 26823782 - 26823822
Alignment:
| Q |
18 |
cataacaactccttcacttgctactttaaatgcctccattt |
58 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26823782 |
cataacaactccttcacttgctactttaaatgcctccattt |
26823822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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