View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18348_high_3 (Length: 587)
Name: NF18348_high_3
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 40 - 569
Target Start/End: Original strand, 25116309 - 25116839
Alignment:
| Q |
40 |
ataagaaaggtgatcgcgacctcattgtcgaacatcctgatccagaaattgacaaaggttcgatgagtgcaaatgagaagcgtgacgnnnnnnnggagtg |
139 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25116309 |
ataagaaaggtaatcgcgacctcattgtcgaacatcctgatccagaaattgacaaaggttcgatgagtgcaaatgagaagcgtgacgaaaaaaaggagtg |
25116408 |
T |
|
| Q |
140 |
tcatacaggtgaaggttacatgattattatagtgaactcatttaagtacgatttgtttattactttaaaacatggcattttcagttatgtcgagtgaagc |
239 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
25116409 |
tcatacaggtgaaggttacatgatcattatagtgaactcatttacgttcgatttgtttattactttaaaatatttcattttcagttatgtcgagtgaagc |
25116508 |
T |
|
| Q |
240 |
gttttcttacctgaacaaagtcacagagaggttaggaatactcgaggattaccaaaaatttgagaagtccctacatagctacagaatgggaacaattaca |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25116509 |
gttttcttacctgaacaaagtcacagagaggttaggaatactcgaggattaccaaaaatttgagaagtccctacatagctacagaatgggaacaattaca |
25116608 |
T |
|
| Q |
340 |
agagaagaactacaaacaatggtaatgttgtttatacatccaaattttcagaagttacatttttggattttctgtcacatcctataactcttgaattgaa |
439 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
25116609 |
agagaagaactacaaaaaatggtaatattgtttatacatccaaattttcagaagttacattttttgattttctgtcacatcctataactcttgaattgaa |
25116708 |
T |
|
| Q |
440 |
tatggcttgcattgaacattaaactttaatacaaaaattatgtt-aaaatactgaaacggagaagaattcatgttgcattcaggtaggcgatttgttggg |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25116709 |
tatggcttgcattgaacattaaactttaatacaaaaattatgttaaaaatactgtaacggagaagaattcatgttgcattcaggtaggcgatttgttggg |
25116808 |
T |
|
| Q |
539 |
aaaacactccgatcttgtggagggatttaac |
569 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
25116809 |
aaaacactccgatcttgtggagggatttaac |
25116839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University