View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18348_high_4 (Length: 479)
Name: NF18348_high_4
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 66 - 460
Target Start/End: Complemental strand, 39693053 - 39692659
Alignment:
| Q |
66 |
agtgtgagaacacaatgattcgtggcaataacacgagaagccaagtgcttatgctggaatggtgtttggatttcgtttgtttgtgaggaagaagaaaagg |
165 |
Q |
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| T |
39693053 |
agtgtgagaacacaatgattcgtggcaataacacgagaagccaagtgcttatgctggaatggtgtttggatttcgtttgttagcgaggaagaagaaaagg |
39692954 |
T |
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| Q |
166 |
acaatattgaatgggaccaaacagttgcatgcgtggcacttgtaacacagattcgggaaaattcgatgagttcttggaatcttgagtactagcgcgtatg |
265 |
Q |
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| T |
39692953 |
acaattttgaatgggaccaaacagttgcatgcgtggcacttgtaacacagattcgggaaaattcgatgagttattggaatcttgagtactagcgcgtatg |
39692854 |
T |
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| Q |
266 |
tgcacgctcaaatgttactgg-ttactag-ttattcagtgtggacaattgtcacgtacatgccacgtggtatgattttgataataaagttgtgaagagat |
363 |
Q |
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| T |
39692853 |
tgcacgctcaaatgttactggtttactagtttattcagtgtggacaattgtcacgtacgtgccacgttgtatgattttgatgataaagttgtga--agat |
39692756 |
T |
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| Q |
364 |
tgactcggtctaggtgaacagaacaaccagatgaaatgccaagtaggaccttcaccatgggccacttatatattattggtccaaaatacactgtaag |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39692755 |
tgactcggtctaggtgaacagaacaaccagatgaaatgccaagtaggaccttcaccatgggccacttatatattattggtccaaaatacagtgtaag |
39692659 |
T |
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