View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18348_high_9 (Length: 289)
Name: NF18348_high_9
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 32261624 - 32261891
Alignment:
| Q |
1 |
agctggtacaaggttgaaagaaggatgccacatcaaccgtagtttactgactctaggaactgtcatccgcaaactcaggttagcttgaaatggttgcact |
100 |
Q |
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| T |
32261624 |
agctggtacaaggttgaaagaaggatgccacatcaaccgtagtttactgactctaggaactgtcatccgcaaactcaggttagcttgaaatggttgcact |
32261723 |
T |
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| Q |
101 |
tcaaatgtgtttactcacacagatgttatatacttttcgtgaaatgtatcctttgattttatctaaaaaagtagaaaatatgaatttgatcacagcaagg |
200 |
Q |
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| T |
32261724 |
tcaaatgtgtttactcacacagatgttatatacttttcgtgaaatgtatcctttgattttatctaaaaaagtagaaaacatgaatttgatcacagcaagg |
32261823 |
T |
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| Q |
201 |
ggcgaaatggacacatccctttcagagattcaaagctaacccgcatactgcagtcttcaataggaggc |
268 |
Q |
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| T |
32261824 |
ggcgaaatggacacatccctttcagagattcaaagctaacccgcatactgcagtcttcaataggaggc |
32261891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 8395128 - 8395202
Alignment:
| Q |
10 |
aaggttgaaagaaggatgccacatcaaccgtagtttactgactctaggaactgtcatccgcaaactcaggttagc |
84 |
Q |
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| T |
8395128 |
aaggttgaaagaaggttgccatataaatcgtagtttattaactctaggaactgttatccgcaaactcaggttagc |
8395202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 268
Target Start/End: Original strand, 8395328 - 8395416
Alignment:
| Q |
180 |
atgaatttgatcacagcaaggggcgaaatggacacatccctttcagagattcaaagctaacccgcatactgcagtcttcaataggaggc |
268 |
Q |
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| T |
8395328 |
atgaatttggttgcagcaagggaagaaatggacatattcctttcagagattcaaagctaacgcgcatattgcaatcatcattaggaggc |
8395416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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