View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18348_low_1 (Length: 1000)
Name: NF18348_low_1
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 807; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 807; E-Value: 0
Query Start/End: Original strand, 132 - 983
Target Start/End: Complemental strand, 36052598 - 36051747
Alignment:
| Q |
132 |
ttaaatacatagccaagtagagaaaggagtctaccttccacgctagaattttccaaaaataattggtttgccttatcattactacacattagaatagcaa |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052598 |
ttaaatacatagccaagtagagaaaggagtctaccttccacgctagaattttccaaaaataattggtttgccttatcattactacacattagaatagcaa |
36052499 |
T |
|
| Q |
232 |
ttgaagagatacatgaagatatcattgcaatagtggcccttaacatgtcaggctgatcatggcaaagttgtgatggtagttcaatagctttatggtgcga |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
36052498 |
ttgaagagatacatgaagatatcattgcaatagtggcccttaacatgtcaggctgatcatggcatagttgtgatggtagttcaatagctttatggtgcga |
36052399 |
T |
|
| Q |
332 |
cacatatgttgaacaaacaatcagcagaacaatgacattaatataatcagtaattgtgatcaaacctgtctgagaaagtttatacactgcactagcttca |
431 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052398 |
cacatatgttgaacaaacaatcagcagaacaatgacattaatataatcagtaattgtgatcaaacctgtctgagaaagtttatacactgcactagcttca |
36052299 |
T |
|
| Q |
432 |
cccaacttaaacataatgataagtgcctctagaagnnnnnnnatcccaaacagtgtggtgatagttgcatttaagaagtgaacttttgcaagagcatggt |
531 |
Q |
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| T |
36052298 |
cccaacttaaacataatgataagtgcctctagaagtttttttatcccaaacagtgtggtgatagttgcatttaagaagtgaacttttgcaagagcatggt |
36052199 |
T |
|
| Q |
532 |
taatatgttgcaaactatcatttgtagtaataacctctctgggaaaagcatgatccctcgtgggcagtttatcgaacatgttccttgcgccggtgatagt |
631 |
Q |
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| T |
36052198 |
taatatgttgcaaactatcatttgtagtaataacctctctgggaaaagcatgatccctcgtgggcagtttatcgaacatgttcctcgcgacggtgatagt |
36052099 |
T |
|
| Q |
632 |
aataacctctctggaacaaaaatgaaaagcacagtccctcttgggaaatttatcaaacaagttcgtcgtactgataaaagtgactacagtggctgggaat |
731 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052098 |
aataacttctctggaacaaaaatgaaaagcacagtccctcttgggaaatttatcaaacaagttcgtcgtactgataaaagtgactacagtggctgggaat |
36051999 |
T |
|
| Q |
732 |
ggatgtttcgatggacctgggtcatatggttcagtgtcagtgattgatgcaaacataacaatgctggattttgtcgactctgccaataacagcacagggt |
831 |
Q |
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| T |
36051998 |
ggatgtttcgatggacctgggtcatatggttcagtgtcagtgattgatgcaaacataacaatgctggattttgttgactctgccaataacagcacagggt |
36051899 |
T |
|
| Q |
832 |
tactcttagatgggtcattatctggcggctttggtggaggcggtgggggaacggcgaagccacctatgaggtgggtgttagttgcttcagaggtaagatg |
931 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36051898 |
tactcttagatgggtcattatctggcggctttggtggaggcggtgggggaacggcgaagccacctacgaggtgggtgttagttgcttcagaggtaagatg |
36051799 |
T |
|
| Q |
932 |
gaaatcagataggtttgtacattttgcaagagctgcagggtggtggattttc |
983 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36051798 |
gaaatcagataggtttgtacattttgcaagagctgcagggtggtggattttc |
36051747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 7e-58
Query Start/End: Original strand, 15 - 129
Target Start/End: Complemental strand, 36052742 - 36052628
Alignment:
| Q |
15 |
atcaaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacatttacaa |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36052742 |
atcaaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacatttacaa |
36052643 |
T |
|
| Q |
115 |
atgttgagaacctat |
129 |
Q |
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||||||||||||||| |
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| T |
36052642 |
atgttgagaacctat |
36052628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 6072465 - 6072371
Alignment:
| Q |
17 |
caaaaggaggttcaaatcatgcaaaacatcatcccaatacaagggaacagacccacaaattccaaagaacccatcagcatgcataaggacattta |
111 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||||| ||||||||||| || ||||||||| |
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| T |
6072465 |
caaaagtaggttcaaatcatgcaaaacatcattgcaatagaagtgaacaaacccacaaattccaaagaactcatcagcatgcttatggacattta |
6072371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 936
Target Start/End: Complemental strand, 38270636 - 38270579
Alignment:
| Q |
879 |
ggaacggcgaagccacctatgaggtgggtgttagttgcttcagaggtaagatggaaat |
936 |
Q |
| |
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|||| ||||||||||||||||| ||| ||||||||||||||||| || |||||||| |
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| T |
38270636 |
ggaatggcgaagccacctatgaattggatgttagttgcttcagagatacaatggaaat |
38270579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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