View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18348_low_10 (Length: 374)
Name: NF18348_low_10
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_low_10 |
 | |
|
| [»] scaffold0197 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0197 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: scaffold0197
Description:
Target: scaffold0197; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 6196 - 5853
Alignment:
| Q |
13 |
aatatggtgaaggaaagtggcatagggttccactattggctggtaaaagttaatcaattatttttcctttttcttgatatttctatttgtcttctctaaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6196 |
aatatggtgaaggaaagtggcatagggttccactattggctggtaaaagttaatcaattatttttcctttttcttgatatttctatttgtcttctctaaa |
6097 |
T |
|
| Q |
113 |
acggatatttaattacttctttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacannnnnnnattgaaaaatcaatcgtcgac |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
6096 |
acggatatttaattacttctttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacatttttttattgaaaaatcaattgtcgac |
5997 |
T |
|
| Q |
213 |
ctcttaaaacggatcatattattttgagagattggtccatactcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgaccga |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5996 |
ctcttaaaacggatcatattattttgagagattggtccatgctcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgaccga |
5897 |
T |
|
| Q |
313 |
ctcttgaagtatgtcatctgaggttccatctctgataaatatgt |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896 |
ctcttgaagtatgtcatctgaggttccatctctgataaatatgt |
5853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0197; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 309
Target Start/End: Complemental strand, 5893 - 5716
Alignment:
| Q |
133 |
ttgaagtatgtcatctgaggttcgatctctcacaaatatgtatggaagaacannnnnnnattgaaaaatcaatcgtcgacctcttaaaacggatcatatt |
232 |
Q |
| |
|
||||||||||||||||||||||| |||||| | ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| || |
|
|
| T |
5893 |
ttgaagtatgtcatctgaggttccatctctgataaatatgtatggaagaacatttttttattg-aaaatcaactgtcgacctcttaaaacggatc-cgtt |
5796 |
T |
|
| Q |
233 |
attttgagagattggtccatac---tcttgactaggaaaaccttgggttcactattaaaatgaaatcatcatgaaatgac |
309 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5795 |
attttgagagattggtccatactcttcttgactagaaaaaccttgggtttactattaaaatgaaatcatcatgaaatgac |
5716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University