View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18348_low_11 (Length: 347)
Name: NF18348_low_11
Description: NF18348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18348_low_11 |
 | |
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| [»] scaffold0256 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0256 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 42 - 332
Target Start/End: Complemental strand, 11365 - 11074
Alignment:
| Q |
42 |
gtatctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatca |
141 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
11365 |
gtatctgctatgctactggaagttcccaatattgcagccaatgttcatgatgcgaagcataagatcatcagtaacaatttccttcgcttgctcgagatca |
11266 |
T |
|
| Q |
142 |
gtgacaaaaaa-cattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgac |
240 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11265 |
gtgacaaaaaaacattcaacggtcctcctgaaatgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgac |
11166 |
T |
|
| Q |
241 |
tatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttag |
332 |
Q |
| |
|
||||||||||||||| | ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11165 |
tatattgcatctcttggcatatggaaatttgtaaaaaaccacgactccgtgctcgaaatgctgaaggacaaaatcaaagaggtggcacttag |
11074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 329
Target Start/End: Original strand, 16580363 - 16580643
Alignment:
| Q |
50 |
tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa |
149 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||||||||| | ||||| ||||||||||||||| |||||| |||||| |||||||||||||||||| |
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|
| T |
16580363 |
tatgctattggaagttttcaatattgcagctaatgttcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaa |
16580462 |
T |
|
| Q |
150 |
aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgc |
248 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||| |
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|
| T |
16580463 |
aaacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacaatattgc |
16580562 |
T |
|
| Q |
249 |
atctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcact |
329 |
Q |
| |
|
||||||| | |||||| ||||||||||||| | || || ||| |||||| |||||||||||| ||| |||| |||||| |
|
|
| T |
16580563 |
atctcttgatgtatggtaatttgtgaaaaatcgaaacgccgtgctagaaatgttgaaggacaaaaccaaggaggaggcact |
16580643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 50 - 329
Target Start/End: Complemental strand, 16615017 - 16614737
Alignment:
| Q |
50 |
tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa |
149 |
Q |
| |
|
||||||| |||||||| ||||||||||| | ||||||||| | ||||| ||||||||||||||| |||||| |||||| |||||||||||||||||| |
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|
| T |
16615017 |
tatgctattggaagttttcaatattgcagctaatgttcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaa |
16614918 |
T |
|
| Q |
150 |
aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgc |
248 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
16614917 |
aaacattcaactgtcctcccgaaaatgttaaggatcatgtcatggttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacaatattgc |
16614818 |
T |
|
| Q |
249 |
atctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcact |
329 |
Q |
| |
|
||||||| | |||||| ||||||||||||| | || || ||| |||||| |||||||||||| ||| |||| |||||| |
|
|
| T |
16614817 |
atctcttgatgtatggtaatttgtgaaaaatcgaaacgccgtgctagaaatgttgaaggacaaaaccaaggaggaggcact |
16614737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 50 - 329
Target Start/End: Original strand, 16874223 - 16874504
Alignment:
| Q |
50 |
tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa |
149 |
Q |
| |
|
||||||| |||||||| ||||||||||||| ||||| ||| | ||||| ||||||||||||||| |||||| | ||| |||||||||||||||||| |
|
|
| T |
16874223 |
tatgctattggaagttttcaatattgcagccaatgttcctgacgtgaagcgtaagatcatcagtaagaatttcagccacttgctcgagatcagtgacaaa |
16874322 |
T |
|
| Q |
150 |
aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgactatattgc |
248 |
Q |
| |
|
||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |||||| |
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|
| T |
16874323 |
aaacattcaacggtcctcccgaaaatgttatggatcatgtcatggttgtcacaatgcttcttatcaatggagacttccacaaggcttgtgacattattgc |
16874422 |
T |
|
| Q |
249 |
atctc-ttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcact |
329 |
Q |
| |
|
||||| || | |||||||||||||||||||| || ||| || ||| |||||| |||||||||||| ||| |||| |||||| |
|
|
| T |
16874423 |
atctctttgatgtatggaaatttgtgaaaaatcaagacgccgtgctggaaatgttgaaggacaaaaccaaggaggaggcact |
16874504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 43 - 278
Target Start/End: Complemental strand, 16977658 - 16977423
Alignment:
| Q |
43 |
tatctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcag |
142 |
Q |
| |
|
||||| |||||||| || ||||||| | || |||||||| |||||| || ||||||||||||||||||| || ||||||| | ||||| |||||||||| |
|
|
| T |
16977658 |
tatcttctatgctaatgcaagttccca-taatgcagccaatgttcaagacgcgaagcataagatcatcaatacgaatttccattgctttttcgagatcag |
16977560 |
T |
|
| Q |
143 |
tgacaaaaaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgact |
241 |
Q |
| |
|
||| ||| || ||||| ||||| || |||| |||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||||||| |
|
|
| T |
16977559 |
tgataaacaaaattcagcggtctaccagaaaatgttaaggatcatgtcatggttgtaacaaggcttcttatgaatggggacttgcacaaggcttttgaca |
16977460 |
T |
|
| Q |
242 |
atattgcatctcttaacgtatggaaatttgtgaaaaa |
278 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
|
|
| T |
16977459 |
atattgcatctcttgacgtatggaaatttgtgaaaaa |
16977423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 16572377 - 16572495
Alignment:
| Q |
50 |
tatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaa |
149 |
Q |
| |
|
||||||| |||||||| ||||||||||||| | ||||||| | ||||| ||||||||||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
16572377 |
tatgctattggaagttttcaatattgcagccaatattcatgacgtgaagcgtaagatcatcagtaagaatttcagtcgcttgctcgagatcagtgacaaa |
16572476 |
T |
|
| Q |
150 |
aaacattcaacggtcctcc |
168 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
16572477 |
aaacattcaacggttctcc |
16572495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 215 - 329
Target Start/End: Original strand, 16572510 - 16572624
Alignment:
| Q |
215 |
atggagacttccacaatgcttttgactatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaat |
314 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||| | |||||||||||||||||||| | || || ||| |||||| |||||||||||| |
|
|
| T |
16572510 |
atggagaattccacaaggcttttgacattattgcatctcttgatgtatggaaatttgtgaaaaatcgagatgccgtgctagaaatgttgaaggacaaaac |
16572609 |
T |
|
| Q |
315 |
caaagaggtggcact |
329 |
Q |
| |
|
||| |||| |||||| |
|
|
| T |
16572610 |
caaggaggaggcact |
16572624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 16691639 - 16691581
Alignment:
| Q |
94 |
cgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagtgacaaaaaa |
152 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| ||||||||| ||||||||||| |
|
|
| T |
16691639 |
cgaagcataagatcatcagtaagaatttccatcgcttgctcgagatcggtgacaaaaaa |
16691581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 43 - 332
Target Start/End: Original strand, 21629113 - 21629401
Alignment:
| Q |
43 |
tatctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcag |
142 |
Q |
| |
|
||||| ||||| || |||||||||| ||||| ||||||| | ||||||| |||||| ||||||||||||||| ||||||| |||||| |||||||| || |
|
|
| T |
21629113 |
tatctgctatggtattggaagttcccaatatggcagccaatattcatgacacgaagcgtaagatcatcagtaagaatttccatcgcttgctcgagataag |
21629212 |
T |
|
| Q |
143 |
tgacaaaa-aacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgac |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||| |||||||| ||||||||||||| ||| || |||||| |
|
|
| T |
21629213 |
tgacaaaagaacattcaacggtcctcctgaaaatgttagggatcatgttatggctgtcacaagacttcttattaatggagacttcctcaaggcctttgac |
21629312 |
T |
|
| Q |
241 |
tatattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttag |
332 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| || |||||| ||| |||| |||||||||||||||| |||| ||||||||| |
|
|
| T |
21629313 |
aatattgcatctctcgatgtatggaaatttgtgaaacactgagactccgtgctagaaa---tgaaggacaaaatcaaggaggaggcacttag |
21629401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 332
Target Start/End: Complemental strand, 233839 - 233549
Alignment:
| Q |
44 |
atctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagt |
143 |
Q |
| |
|
|||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||| ||||||||||||||| ||||||| ||||| || ||| ||||| |
|
|
| T |
233839 |
atctgctatgctgctggaagttccaaacatggcagccaatgttcatgatgctaagcgtaagatcatcagtaagaatttccgccgcttgcttgaggtcagt |
233740 |
T |
|
| Q |
144 |
gacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgact |
241 |
Q |
| |
|
|| ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||| ||||||| |||||||| ||||| || || |||||| |
|
|
| T |
233739 |
gagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaagggttcttattaatggagatttccagaaggcctttgaca |
233640 |
T |
|
| Q |
242 |
atattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttag |
332 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| | ||| || ||| ||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
233639 |
ttattgcatctcttgaggtttggaaatttgtgaaaaatcgtgacaccgtgctagaaatgctgaaggacaaaatcaaggaggaggcgcttag |
233549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 44 - 332
Target Start/End: Complemental strand, 48298955 - 48298665
Alignment:
| Q |
44 |
atctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagt |
143 |
Q |
| |
|
|||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||| ||||||||||||||| ||||||| ||||| || ||| ||||| |
|
|
| T |
48298955 |
atctgctatgctgctggaagttcccaacatggcagccaatgttcatgatgctaagcgtaagatcatcagtaagaatttccgccgcttgcttgaggtcagt |
48298856 |
T |
|
| Q |
144 |
gacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgact |
241 |
Q |
| |
|
|| ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||| ||||||| ||||| || ||||| || || |||||| |
|
|
| T |
48298855 |
gagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaagggttcttattaatggcgatttccagaaggcctttgaca |
48298756 |
T |
|
| Q |
242 |
atattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttag |
332 |
Q |
| |
|
||||||||||||| | || ||||||||||||||||| | ||| || ||| ||||||||||||||||||||||| |||| ||| ||||| |
|
|
| T |
48298755 |
ttattgcatctcttgaggtgtggaaatttgtgaaaaatcgtgacaccgtgctagaaatgctgaaggacaaaatcaaggaggaggcgcttag |
48298665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 44 - 332
Target Start/End: Original strand, 7391656 - 7391946
Alignment:
| Q |
44 |
atctactatgctactggaagttccgaatattgcagccagtgttcatgatgcgaagcataagatcatcagtaacaatttccttcgctttctcgagatcagt |
143 |
Q |
| |
|
|||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||| ||||||||||||||| ||||||| ||||| || ||| |||| |
|
|
| T |
7391656 |
atctgctatgctgctggaagttcccaacatggcagccaatgttcatgatgcaaagcgtaagatcatcagtaagaatttccgacgcttgcttgaggtcagc |
7391755 |
T |
|
| Q |
144 |
gacaaa-aaacattcaacggtcctcctgaaa-tgttaaggatcatgtcatggttgtcacaaggcttcttatcaatggagacttccacaatgcttttgact |
241 |
Q |
| |
|
|| ||| ||||||||| |||||||||||||| ||| | ||||||||| |||| || ||||||| ||||||| |||||||| ||||| || || |||||| |
|
|
| T |
7391756 |
gagaaacaaacattcaccggtcctcctgaaactgtcagggatcatgttatggctgccacaagggttcttattaatggagatttccagaaggcctttgaca |
7391855 |
T |
|
| Q |
242 |
atattgcatctcttaacgtatggaaatttgtgaaaaaccacgactccacgctcgaaatgctgaaggacaaaatcaaagaggtggcacttag |
332 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||| | ||| || ||| |||||||| |||||||||||||| || | ||||||||| |
|
|
| T |
7391856 |
ttattgcatctcttgacgtctggaaatttgtgaaaaatcgagacgccgtgctagaaatgcttaaggacaaaatcaaggaagaggcacttag |
7391946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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